Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 102 8e-17
seq194317 102 8e-17
seq155647 96.9 3e-15
seq176217 89.7 5e-13
seq116321 84.2 2e-11
seq188063 82.4 8e-11
seq160375 82.4 8e-11
seq93507 82.4 8e-11
>seq194543
Length=10949
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || |||||||| ||| | ||||| ||||||||| ||||| || | |
Sbjct 3219 GACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCA 3160
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
||||||||||||| || |||||||| || ||||| || || ||| ||| ||| |
Sbjct 3159 AAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTTGCTTTCACG 3100
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | || |||| || ||||||| || | || |||||||| || |||||
Sbjct 3099 TTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTC 3040
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 3039 ACGAAGATCTGCAT 3026
>seq194317
Length=10706
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || |||||||||||| | ||| | |||||| || || || ||||
Sbjct 1339 GATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCG 1398
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||||||||| || ||||| ||||||||||| ||| ||| ||| | |
Sbjct 1399 AAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGACA 1458
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||| | || || ||||| | || | ||||| || || | |||||
Sbjct 1459 TTG-TCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTT 1517
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 1518 GACGAAGATCTGCAT 1532
>seq155647
Length=3035
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || ||||||||| ||||| || |
Sbjct 2203 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCGTCCTCGAGCTGTTTGCCAGCG 2144
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || || || |||||||| || || ||||| ||||| ||| || || | |
Sbjct 2143 AAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACA 2084
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||| | || || ||||||| || | || ||||| || || |||||
Sbjct 2083 TTG-TCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATGGTCTTACCCGTTAGGGTTTT 2025
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 2024 GACGAAGATCTGCAT 2010
>seq176217
Length=4970
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|| || || | | ||||||||||||| |||||||| ||| | ||||| ||||||
Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
||||| || |||| | |||| || | || ||||| || || || ||||| ||||| |
Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885
Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585
|| || ||| | | || | ||||| | || ||||| | || | |||||
Sbjct 2886 ATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTT 2945
Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| ||||| ||||| || || ||||||||
Sbjct 2946 CCTGTCAGGGTTTTCACGAAGATCTGCAT 2974
>seq116321
Length=1411
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|| ||||| | | | |||||||| ||||| ||||| ||| || || || |||||||
Sbjct 1072 ACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAAGGTCCGACCGTCCTCG 1013
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
|||||||| |||| |||| || | ||| ||||| || || ||||| || ||||| |
Sbjct 1012 AGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 953
Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585
|| || || | | || | ||| || | ||||||||| | || | || ||
Sbjct 952 ATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTT 893
Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| |||| || || || || ||||||||
Sbjct 892 CCGGTCAAGGTCTTGACGAAGATCTGCAT 864
>seq188063
Length=7454
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| |||| | ||| | || ||||| | | | || |||||||| |||||||| |||
Sbjct 509 GCCACCTCTGAGACGGAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGC 568
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||||| |||||||||||| || |||| |||| || | || ||||| || ||
Sbjct 569 AAGGGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGG 628
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || ||| | | || | ||| || | | | |
Sbjct 629 AATCCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTATCGATGGTATCAGAGCTTTTCTC 688
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | ||| | || || || || || ||||| || |||||||||||
Sbjct 689 CTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATCTGCAT 736
>seq160375
Length=3367
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || | || ||| | || || || | | | || ||||| |||||||||||||| |
Sbjct 698 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 757
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| ||||| || |||| |||| || | ||| |||||||| ||
Sbjct 758 AAGGTACGGCCATCCTCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 817
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||||| ||| |||
Sbjct 818 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 877
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | || | || || || |||| || || ||||| |||||||||
Sbjct 878 TCCAAAGTGATTGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 925
>seq93507
Length=917
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| |||| | ||| | || ||||| | | | || |||||||| |||||||| |||
Sbjct 604 GCCACCTCTGAGACGAAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGC 663
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||||| |||||| ||||| || |||| |||| || | || ||||| || ||
Sbjct 664 AAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGG 723
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | ||| |||| | | |
Sbjct 724 AATCCCTTCCTTGTCTTGGATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCTC 783
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | ||| | || || || || || ||||| ||||||||||||||
Sbjct 784 CTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATCTGCAT 831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495020484734160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |