Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq194543 102 8e-17 seq194317 102 8e-17 seq155647 96.9 3e-15 seq176217 89.7 5e-13 seq116321 84.2 2e-11 seq188063 82.4 8e-11 seq160375 82.4 8e-11 seq93507 82.4 8e-11 >seq194543 Length=10949 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||| ||| | ||||| ||||||||| ||||| || | | Sbjct 3219 GACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCA 3160 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 ||||||||||||| || |||||||| || ||||| || || ||| ||| ||| | Sbjct 3159 AAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTTGCTTTCACG 3100 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || |||| || ||||||| || | || |||||||| || ||||| Sbjct 3099 TTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTC 3040 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3039 ACGAAGATCTGCAT 3026 >seq194317 Length=10706 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | ||| | |||||| || || || |||| Sbjct 1339 GATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCG 1398 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||||||||| || ||||| ||||||||||| ||| ||| ||| | | Sbjct 1399 AAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGACA 1458 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | || || ||||| | || | ||||| || || | ||||| Sbjct 1459 TTG-TCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTT 1517 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1518 GACGAAGATCTGCAT 1532 >seq155647 Length=3035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| ||||| || | Sbjct 2203 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCGTCCTCGAGCTGTTTGCCAGCG 2144 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || || || |||||||| || || ||||| ||||| ||| || || | | Sbjct 2143 AAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACA 2084 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | || || ||||||| || | || ||||| || || ||||| Sbjct 2083 TTG-TCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATGGTCTTACCCGTTAGGGTTTT 2025 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2024 GACGAAGATCTGCAT 2010 >seq176217 Length=4970 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || || || | | ||||||||||||| |||||||| ||| | ||||| |||||| Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||| || |||| | |||| || | || ||||| || || || ||||| ||||| | Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || ||| | | || | ||||| | || ||||| | || | ||||| Sbjct 2886 ATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTT 2945 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| ||||| || || |||||||| Sbjct 2946 CCTGTCAGGGTTTTCACGAAGATCTGCAT 2974 >seq116321 Length=1411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | |||||||| ||||| ||||| ||| || || || ||||||| Sbjct 1072 ACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAAGGTCCGACCGTCCTCG 1013 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| |||| |||| || | ||| ||||| || || ||||| || ||||| | Sbjct 1012 AGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 953 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || || | | || | ||| || | ||||||||| | || | || || Sbjct 952 ATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTT 893 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| || || || || |||||||| Sbjct 892 CCGGTCAAGGTCTTGACGAAGATCTGCAT 864 >seq188063 Length=7454 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | || ||||| | | | || |||||||| |||||||| ||| Sbjct 509 GCCACCTCTGAGACGGAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGC 568 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| |||||||||||| || |||| |||| || | || ||||| || || Sbjct 569 AAGGGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGG 628 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | | || | ||| || | | | | Sbjct 629 AATCCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTATCGATGGTATCAGAGCTTTTCTC 688 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || || || || ||||| || ||||||||||| Sbjct 689 CTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATCTGCAT 736 >seq160375 Length=3367 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | || || || | | | || ||||| |||||||||||||| | Sbjct 698 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 757 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| ||||| || |||| |||| || | ||| |||||||| || Sbjct 758 AAGGTACGGCCATCCTCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 817 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||| ||| Sbjct 818 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 877 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || |||| || || ||||| ||||||||| Sbjct 878 TCCAAAGTGATTGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 925 >seq93507 Length=917 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | || ||||| | | | || |||||||| |||||||| ||| Sbjct 604 GCCACCTCTGAGACGAAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGC 663 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| |||||| ||||| || |||| |||| || | || ||||| || || Sbjct 664 AAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGG 723 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||| |||| | | | Sbjct 724 AATCCCTTCCTTGTCTTGGATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCTC 783 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || || || || ||||| |||||||||||||| Sbjct 784 CTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATCTGCAT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495020484734160