Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq156113 111 1e-19 seq162333 107 1e-18 seq176217 100 2e-16 seq194543 96.9 2e-15 seq101090 95.1 9e-15 seq160375 93.3 3e-14 seq181690 86.0 4e-12 seq188192 84.2 2e-11 seq194317 82.4 5e-11 >seq156113 Length=3066 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| | ||| || | || | ||| | || || || || || ||||| ||||| ||| Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || ||| | | ||||| ||||| || |||||| | ||||| ||||| || || || Sbjct 1052 -AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGG 994 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| |||||| |||||| | || ||||||||| | || || Sbjct 993 AATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGAC 934 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || ||||| || || || ||||| || || || ||||| Sbjct 933 TTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq162333 Length=3517 Score = 107 bits (118), Expect = 1e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || ||||||||||||||||| || || ||||| |||||||| || ||| | | | Sbjct 3143 CTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGAGTCCGACCA 3084 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||||||||||||||||||| | ||||| | |||||| || |||||| ||||||||| Sbjct 3083 TCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGTGGAATGCCTTCCTTG 3024 Query 15082 TC 15083 || Sbjct 3023 TC 3022 >seq176217 Length=4970 Score = 100 bits (110), Expect = 2e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCTGAGAATTCTCGCGTCTTC 15026 || || || ||||| || || ||||| |||||||||| |||| || | ||| | || || Sbjct 2310 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCT-AGGGTCCTCCCATCCTC 2368 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | |||| | ||| ||||| ||||| |||||||| || Sbjct 2369 CAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTG 2428 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||||| || || | || || |||||| | |||| || || || || ||||| | Sbjct 2429 GATCTTTGC-CTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCT 2487 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || |||||||| || || |||||||| Sbjct 2488 TCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || ||||| || ||||||||| || | | |||| || Sbjct 2538 ACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCAAGGGTACGGCCGTCCTCG 2597 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| || | || | | || ||||| ||||||||||||||||| Sbjct 2598 AGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2657 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| || | || || || || |||| || ||||| || |||||||| Sbjct 2658 ATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCTTTCGACCTCTAAAGTGATGGTTTTT 2717 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || || || || |||||||| Sbjct 2718 CCTGTCAGGGTCTTCACGAATATTTGCAT 2746 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || ||||| |||||||||||| || | | | || || Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| || | || | | || ||||| ||||||||||||||||| Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| || | || ||||| || |||| || || || || |||||||| Sbjct 2886 ATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTT 2945 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| || || || ||||| Sbjct 2946 CCTGTCAGGGTTTTCACGAAGATCTGCAT 2974 >seq194543 Length=10949 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || ||||| ||||||||||||||| ||| | | |||| || | ||| Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || ||||| | || | |||||| || || || ||||||||||| || || ||| Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTT 3109 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| || | || ||||||||| |||| || || | ||| || || ||||| || Sbjct 3108 GC-TTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGT 3050 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || ||||| || || || ||||| | | ||| Sbjct 3049 TAGGGTTTTCACGAAGATCTGCATCTGTTAAA 3018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| | ||| || | || | ||| | || || || || || || || ||||| ||| Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | | ||||| || || || || || | ||||||||||| || || || Sbjct 3648 -AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGG 3590 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||| || || |||||| || ||| | || |||||||| | || || Sbjct 3589 AATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGAC 3530 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| ||||| || || || ||||| || || |||||||| Sbjct 3529 TTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482 >seq101090 Length=1060 Score = 95.1 bits (104), Expect = 9e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || ||||||||||||||||| || || ||||| |||||||| || ||| | | | Sbjct 185 CTCAAAACTAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTCCGACCA 244 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| ||||||||||||||| | ||||| | ||| | || |||||| ||||||||| Sbjct 245 TCTTCCAATTGTTTGCCAGCGAAAATCAATCTTTGTGGATCAGGTGGAATGCCTTCCTTG 304 Query 15082 TC 15083 || Sbjct 305 TC 306 >seq160375 Length=3367 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || |||||||| || || || || ||||||||||| || || | | |||| || Sbjct 1172 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAG-GTACGGCCGTCCTC 1230 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||||| || |||||| | || | | ||| ||||| ||| ||||| |||||||| Sbjct 1231 CAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1290 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || || | || || || ||| |||| || || ||||| ||||| || Sbjct 1291 AATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTCTT 1350 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| || ||||| Sbjct 1351 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380 >seq181690 Length=5866 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025 ||| ||||||||||| || || ||||| || |||||||| ||| || | ||| | || | Sbjct 3208 AACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCT-AGGGTCCTCCCATCCT 3266 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | || ||||| || || | || | | || ||||| || || || ||||| || Sbjct 3267 CCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTT 3326 Query 15086 AAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||||| || || | || || ||||| | | || || || | ||| ||||| Sbjct 3327 GAATCTTTGC-CTTAACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTC 3385 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || ||||| ||||| ||||||||| Sbjct 3386 TTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3418 >seq188192 Length=7493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| | | ||| ||||| | |||||| || || || || || |||||||| || ||| Sbjct 4790 CCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCT 4849 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| ||| | ||||| |||||||||||||| | ||||| | |||||| || || Sbjct 4850 -AGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCCGGCGG 4908 Query 15069 AATTCCTTCCTTGTC 15083 || ||||||||||| Sbjct 4909 GATACCTTCCTTGTC 4923 >seq194317 Length=10706 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| ||| ||| |||| |||| || | || Sbjct 1330 TGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGC 1389 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 ||||| ||| | || | ||||||||||| ||| || ||||| ||||| || ||| Sbjct 1390 TTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTT 1449 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||| | || || || || ||| || |||| ||| |||||||| || || Sbjct 1450 GC-TTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGT 1508 Query 15153 CAGAGTTTTTACAAAAATTTGCATATT 15179 | ||||| || || || ||||| || Sbjct 1509 TAAGGTTTTGACGAAGATCTGCATCTT 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356519972789855