Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq194543 129 5e-25 seq156113 129 5e-25 seq176217 104 2e-17 seq181690 100 3e-16 seq155647 96.9 3e-15 seq188063 95.1 1e-14 seq93507 95.1 1e-14 seq194317 91.5 1e-13 seq101090 84.2 2e-11 >seq194543 Length=10949 Score = 129 bits (142), Expect = 5e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAG 45183 ||||| ||| ||||||| ||| || ||||| |||||||||||||| ||| | ||| Sbjct 3697 CCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT-AGGGTCCGCC 3639 Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| ||||| || || || || | ||||| || ||||| || || ||||| ||||||| Sbjct 3638 CATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGAATCCCTTCTT 3579 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||| ||||| |||| || | || || || ||||||||| | |||| Sbjct 3578 TATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGACTTCCAAGGTAA 3519 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||| || || ||||| || || ||||||||| ||| || Sbjct 3518 TTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCATCCCGCCAC 3474 >seq156113 Length=3066 Score = 129 bits (142), Expect = 5e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAG 45183 ||||| ||| ||||||| ||| || ||||| ||||| |||||||| ||| | |||| Sbjct 1101 CCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT-AGGGTTCGCC 1043 Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| |||||||| || || ||| | ||||| || ||||| ||||| ||||| ||||| | Sbjct 1042 CATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCT 983 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 | ||||| ||||| || | || | || ||||| ||||||||| | || | Sbjct 982 TGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGACTTCCAAGGTGA 923 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||||||| ||||| || || || |||||| Sbjct 922 TTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCATC 885 >seq176217 Length=4970 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAAT-CGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||||| || || ||||||||||| || |||| |||| | ||| | ||| |||| ||| Sbjct 2316 TGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCT-AGGGTCCTCCCATCCTCCAGTTG 2374 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | |||| | ||||||||||| ||||| ||||| |||||||| | | | Sbjct 2375 TTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTGGA-TCT 2433 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| | | || | || | || |||||| || || || | ||| | || || |||| Sbjct 2434 TTGCCTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTTCCCGG 2493 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || || |||||||| Sbjct 2494 TGAGAGTTTTCACGAATATTTGCAT 2518 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | ||| || || |||||||||||||| ||||| ||| Sbjct 1836 CCACCTCGGAGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCA 1895 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || |||| || || |||||| | ||||| | ||||| ||||| ||| Sbjct 1896 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGA 1955 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || |||||||| || || |||| || | || |||||| ||| || Sbjct 1956 ATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTATCAATTGTATCGGAACTCTCAACC 2015 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || || ||||| | || || |||||||| ||||| Sbjct 2016 TCCAAGGTTATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062 >seq181690 Length=5866 Score = 100 bits (110), Expect = 3e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATT 45195 ||| || || || |||||||||||||| ||||| ||| | ||| | ||| ||||| | Sbjct 3214 ATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCT-AGGGTCCTCCCATCCTCCAACT 3272 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| ||||| | || | | ||||||||| || || || || || |||||||||| | Sbjct 3273 GTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGAA-TC 3331 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 |||| | | || | || | ||| || ||| ||| || || || || | || || || Sbjct 3332 TTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCTTCCCT 3391 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||| |||||||| Sbjct 3392 GTGAGGGTTTTCACAAATATTTGCAT 3417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTG 45196 || || ||||| |||||||||||||| ||||| ||| | ||| | ||| ||||| || Sbjct 3443 TGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCT-AGGGTCCTCCCATCCTCCAACTG 3501 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| ||||| | || | | ||||||||| || ||||| ||||| |||||||| || || Sbjct 3502 TTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTGGATCTT 3561 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | |||| || | || || || || || || || || | || || ||||| Sbjct 3562 TGCCTTGACATTATCAATTGTATCAGAGCTTTCCACCTCAAGGGTGATGGTCTTACCGGT 3621 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || |||||| Sbjct 3622 GAGGGTTTTCACAAAGATCTGCATC 3646 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || | ||| || || |||||||||||||| ||||| || | Sbjct 2507 CCACCTCGGAGGCGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCG 2566 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || |||| || |||||||| | ||||||| ||||| || |||||| Sbjct 2567 AGGGTACGGCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGA 2626 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || ||||| |||||||| ||| || | || | || | ||||| || ||| || Sbjct 2627 ATACCCTCTTTGTCTTGAATCTTTGACTTCA-CGTTATCAATAGTGTCAGAGTTCTCCAC 2685 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| | ||| | || || || || | || || || ||||| |||||| Sbjct 2686 TTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCATC 2734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| ||||| | ||||| | ||||| ||||||||||| || || || Sbjct 2806 ATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTCCTT 2865 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 || ||||||||| || | || | || | ||||| ||| ||| || || | ||| | Sbjct 2866 GTCCTGAATTTTTGCCTTTA-CGTTGTCAATTGTGTCTGAACTCTCCACCTCCAAAGTGA 2924 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| |||||||| Sbjct 2925 TAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| ||||| ||||| | ||| || || | ||| Sbjct 2987 TGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCAAGGGTGCGTCCGTCTTCAAGCTGT 3046 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | | ||||||||| || || || || || |||||||||| | || Sbjct 3047 TTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTATCTTGAA-TCTT 3105 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | | || | || | ||| || ||| ||| ||||| || || | || || || || Sbjct 3106 TGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACTTCAAGGGTTATGGTCTTCCCTGT 3165 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| |||||||| Sbjct 3166 GAGGGTTTTCACAAATATTTGCAT 3189 >seq155647 Length=3035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || | ||| | || ||| || || ||||| || ||||| ||||| || || ||| Sbjct 2237 TCCACCTCTGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 2178 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| | || || | ||||| || ||| | || | |||||||||||||| || Sbjct 2177 TAGGGTCCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGG 2118 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || || || |||| || | |||||| || || || || Sbjct 2117 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAAC 2058 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || || ||||| ||||| || || || ||||| Sbjct 2057 CTCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 2010 >seq188063 Length=7454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||||||||| || |||||| | ||| | || || | ||| Sbjct 533 ATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTCGAGTTG 592 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| ||| | || | || ||||||||| || ||||| ||||| || ||||| || || Sbjct 593 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 652 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||||| || | || | ||| || || | | || || || | || ||||||| Sbjct 653 AGCTTTGA-CGTTATCGATGGTATCAGAGCTTTTCTCCTCAAGCGTGATGGTCTTGCCGG 711 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 |||| ||||| || ||||| |||||| Sbjct 712 TTAGGGTTTTCACGAAAATCTGCATC 737 >seq93507 Length=917 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||||||||| || |||||| | ||| || || | ||| Sbjct 628 ATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCAAGTTG 687 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| ||| | || | || ||||||||| || ||||| ||||| || ||||| || || Sbjct 688 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 747 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||| || | || | ||| ||||| | | || || || | || ||||||| Sbjct 748 AGCGTTGA-CGTTATCGATGGTATCGGAGCTTTTCTCCTCAAGCGTGATGGTCTTGCCGG 806 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 |||| ||||| |||||||| |||||| Sbjct 807 TTAGGGTTTTCACAAAAATCTGCATC 832 >seq194317 Length=10706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || ||||| |||||||| ||||| || || ||| Sbjct 1306 CCGCCGCGAAGGCGGAGGACGAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCT 1365 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || |||| || || || ||| | || | || || ||||| || || Sbjct 1366 AGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGT 1425 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||| || || || ||| ||||| || | |||||| || || || || Sbjct 1426 ATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACC 1485 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||||| ||||||| ||||| || || || |||||| Sbjct 1486 TCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACGAAGATCTGCATC 1533 >seq101090 Length=1060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45122 GAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTT 45181 ||||||||| |||| ||| || ||||| ||||||||||| || || || | || Sbjct 181 GAGCCTCAAAACTAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTCCG 240 Query 45182 AGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTC 45241 | ||| ||||||||||| || ||| | ||||||| ||| | || || ||||||||||| Sbjct 241 ACCATCTTCCAATTGTTTGCCAGCGAAAATCAATCTTTGTGGATCAGGTGGAATGCCTTC 300 Query 45242 TTTATC 45247 || || Sbjct 301 CTTGTC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450872045041880