Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 129 5e-25
seq156113 129 5e-25
seq176217 104 2e-17
seq181690 100 3e-16
seq155647 96.9 3e-15
seq188063 95.1 1e-14
seq93507 95.1 1e-14
seq194317 91.5 1e-13
seq101090 84.2 2e-11
>seq194543
Length=10949
Score = 129 bits (142), Expect = 5e-25
Identities = 165/225 (73%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAG 45183
||||| ||| ||||||| ||| || ||||| |||||||||||||| ||| | |||
Sbjct 3697 CCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT-AGGGTCCGCC 3639
Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243
||| ||||| || || || || | ||||| || ||||| || || ||||| |||||||
Sbjct 3638 CATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGAATCCCTTCTT 3579
Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303
||||||| ||||| |||| || | || || || ||||||||| | ||||
Sbjct 3578 TATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGACTTCCAAGGTAA 3519
Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|||||||| || || ||||| || || ||||||||| ||| ||
Sbjct 3518 TTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCATCCCGCCAC 3474
>seq156113
Length=3066
Score = 129 bits (142), Expect = 5e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAG 45183
||||| ||| ||||||| ||| || ||||| ||||| |||||||| ||| | ||||
Sbjct 1101 CCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT-AGGGTTCGCC 1043
Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243
||| |||||||| || || ||| | ||||| || ||||| ||||| ||||| ||||| |
Sbjct 1042 CATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCT 983
Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303
| ||||| ||||| || | || | || ||||| ||||||||| | || |
Sbjct 982 TGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGACTTCCAAGGTGA 923
Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||||||||||||| ||||| || || || ||||||
Sbjct 922 TTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCATC 885
>seq176217
Length=4970
Score = 104 bits (114), Expect = 2e-17
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAAT-CGCTGACGGTTTTAGAATCGTCCAATTG 45196
||||| || || ||||||||||| || |||| |||| | ||| | ||| |||| |||
Sbjct 2316 TGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCT-AGGGTCCTCCCATCCTCCAGTTG 2374
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||| || || | |||| | ||||||||||| ||||| ||||| |||||||| | | |
Sbjct 2375 TTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTGGA-TCT 2433
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
||| | | || | || | || |||||| || || || | ||| | || || ||||
Sbjct 2434 TTGCCTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTTCCCGG 2493
Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340
| |||||||| || || ||||||||
Sbjct 2494 TGAGAGTTTTCACGAATATTTGCAT 2518
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| | ||| || || |||||||||||||| ||||| |||
Sbjct 1836 CCACCTCGGAGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCA 1895
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| || |||| || || |||||| | ||||| | ||||| ||||| |||
Sbjct 1896 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGA 1955
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || |||||||| || || |||| || | || |||||| ||| ||
Sbjct 1956 ATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTATCAATTGTATCGGAACTCTCAACC 2015
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | || | || || ||||| | || || |||||||| |||||
Sbjct 2016 TCCAAGGTTATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062
>seq181690
Length=5866
Score = 100 bits (110), Expect = 3e-16
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATT 45195
||| || || || |||||||||||||| ||||| ||| | ||| | ||| ||||| |
Sbjct 3214 ATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCT-AGGGTCCTCCCATCCTCCAACT 3272
Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255
|||| ||||| | || | | ||||||||| || || || || || |||||||||| |
Sbjct 3273 GTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGAA-TC 3331
Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
|||| | | || | || | ||| || ||| ||| || || || || | || || ||
Sbjct 3332 TTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCTTCCCT 3391
Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| ||||| ||||||||
Sbjct 3392 GTGAGGGTTTTCACAAATATTTGCAT 3417
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTCCAATTG 45196
|| || ||||| |||||||||||||| ||||| ||| | ||| | ||| ||||| ||
Sbjct 3443 TGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCT-AGGGTCCTCCCATCCTCCAACTG 3501
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||| ||||| | || | | ||||||||| || ||||| ||||| |||||||| || ||
Sbjct 3502 TTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTGGATCTT 3561
Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
| |||| || | || || || || || || || || | || || |||||
Sbjct 3562 TGCCTTGACATTATCAATTGTATCAGAGCTTTCCACCTCAAGGGTGATGGTCTTACCGGT 3621
Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| ||||| || ||||||
Sbjct 3622 GAGGGTTTTCACAAAGATCTGCATC 3646
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | || | ||| || || |||||||||||||| ||||| || |
Sbjct 2507 CCACCTCGGAGGCGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCG 2566
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| || |||| || |||||||| | ||||||| ||||| || ||||||
Sbjct 2567 AGGGTACGGCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGA 2626
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| || ||||| |||||||| ||| || | || | || | ||||| || ||| ||
Sbjct 2627 ATACCCTCTTTGTCTTGAATCTTTGACTTCA-CGTTATCAATAGTGTCAGAGTTCTCCAC 2685
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| | ||| | || || || || | || || || ||||| ||||||
Sbjct 2686 TTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCATC 2734
Score = 87.8 bits (96), Expect = 2e-12
Identities = 115/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| ||||||||||| ||||| | ||||| | ||||| ||||||||||| || || ||
Sbjct 2806 ATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTCCTT 2865
Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303
|| ||||||||| || | || | || | ||||| ||| ||| || || | ||| |
Sbjct 2866 GTCCTGAATTTTTGCCTTTA-CGTTGTCAATTGTGTCTGAACTCTCCACCTCCAAAGTGA 2924
Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | || || ||||| ||||||||
Sbjct 2925 TAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||| ||||| ||||| | ||| || || | |||
Sbjct 2987 TGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCAAGGGTGCGTCCGTCTTCAAGCTGT 3046
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | || | | ||||||||| || || || || || |||||||||| | ||
Sbjct 3047 TTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTATCTTGAA-TCTT 3105
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| | | || | || | ||| || ||| ||| ||||| || || | || || || ||
Sbjct 3106 TGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACTTCAAGGGTTATGGTCTTCCCTGT 3165
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| ||||| ||||||||
Sbjct 3166 GAGGGTTTTCACAAATATTTGCAT 3189
>seq155647
Length=3035
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
||| || | ||| | || ||| || || ||||| || ||||| ||||| || || |||
Sbjct 2237 TCCACCTCTGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 2178
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
| ||| | || || | ||||| || ||| | || | |||||||||||||| ||
Sbjct 2177 TAGGGTCCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGG 2118
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292
|||||||| || || || || || |||| || | |||||| || || || ||
Sbjct 2117 GATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAAC 2058
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| | || || || ||||| ||||| || || || |||||
Sbjct 2057 CTCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 2010
>seq188063
Length=7454
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||| || || |||||||||||||| || |||||| | ||| | || || | |||
Sbjct 533 ATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTCGAGTTG 592
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||||| ||| | || | || ||||||||| || ||||| ||||| || ||||| || ||
Sbjct 593 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 652
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
||||| || | || | ||| || || | | || || || | || |||||||
Sbjct 653 AGCTTTGA-CGTTATCGATGGTATCAGAGCTTTTCTCCTCAAGCGTGATGGTCTTGCCGG 711
Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341
|||| ||||| || ||||| ||||||
Sbjct 712 TTAGGGTTTTCACGAAAATCTGCATC 737
>seq93507
Length=917
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||| || || |||||||||||||| || |||||| | ||| || || | |||
Sbjct 628 ATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCAAGTTG 687
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||||| ||| | || | || ||||||||| || ||||| ||||| || ||||| || ||
Sbjct 688 CTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGGATCTT 747
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
|||| || | || | ||| ||||| | | || || || | || |||||||
Sbjct 748 AGCGTTGA-CGTTATCGATGGTATCGGAGCTTTTCTCCTCAAGCGTGATGGTCTTGCCGG 806
Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341
|||| ||||| |||||||| ||||||
Sbjct 807 TTAGGGTTTTCACAAAAATCTGCATC 832
>seq194317
Length=10706
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | || || || ||||| |||||||| ||||| || || |||
Sbjct 1306 CCGCCGCGAAGGCGGAGGACGAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCT 1365
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | || |||| || || || ||| | || | || || ||||| || ||
Sbjct 1366 AGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGT 1425
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
||||||||||| || || || ||| ||||| || | |||||| || || || ||
Sbjct 1426 ATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACC 1485
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || | ||||| ||||||| ||||| || || || ||||||
Sbjct 1486 TCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACGAAGATCTGCATC 1533
>seq101090
Length=1060
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 45122 GAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTT 45181
||||||||| |||| ||| || ||||| ||||||||||| || || || | ||
Sbjct 181 GAGCCTCAAAACTAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTCCG 240
Query 45182 AGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTC 45241
| ||| ||||||||||| || ||| | ||||||| ||| | || || |||||||||||
Sbjct 241 ACCATCTTCCAATTGTTTGCCAGCGAAAATCAATCTTTGTGGATCAGGTGGAATGCCTTC 300
Query 45242 TTTATC 45247
|| ||
Sbjct 301 CTTGTC 306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450872045041880
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