Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq197427 176 7e-39 >seq197427 Length=19924 Score = 176 bits (194), Expect = 7e-39 Identities = 550/842 (65%), Gaps = 26/842 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT----TCCATGAACCCGAAT 159703 |||||||||||||||| ||||| |||| || | |||| ||||| | | || Sbjct 13689 TCTTCTCGAAAAAGTTTGTCTTCCCCTGCAA----ACTGATCAGCTCCATCCAATCAAAC 13744 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || |||||| | | || || | | || | ||| ||| || ||| || || || Sbjct 13745 GGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAACAGCCTATCAGCGACG 13804 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 ||||| || || | |||| || | || || |||| ||| | || ||||| Sbjct 13805 AATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGAGCACACGGCAGCGCG 13864 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883 || | | ||||||| |||| ||||| ||||| |||| |||||| | ||| || || Sbjct 13865 TCGCAGACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAATTCCCCTGACTCGCTCC 13924 Query 159884 TACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | | | |||| | | | | || |||| | ||| ||||| |||||||||| Sbjct 13925 TCGCTCAGCTT---CTGAGTCAGCAACTCGTACAGCAAGCAGGCAAAATCGCAGTGCAAG 13981 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 || ||||| | ||||| ||||||||||| | | | | || ||||| | ||| ||| | Sbjct 13982 CCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGGCATCAACCCGCGCTTT 14041 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAA 160062 |||||||| || || | |||| |||| ||| || || ||||| || ||| ||||| Sbjct 14042 TTGAGCCAGAAGATCG-CGCAGAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAA 14100 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122 || |||| | ||| | ||||| || ||| | ||||| | |||||| | Sbjct 14101 GGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTC---GATCCACTTGAGGGCCCACTT 14157 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 ||||||||| | | ||| || || ||||| |||| || | | ||||| ||| || Sbjct 14158 GGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCCGGTCCTTCTCGTT 14217 Query 160183 CACATCCTTGA--TCAGAGT--AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 |||||||| | || | ||||| ||| ||||||||| | ||| | || | Sbjct 14218 AGAATCCTTGATGTACGACTCGAGCAAGAGGCT----GTACATTTCGGAGTGGATGTTCT 14273 Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CTGCACCTCCTGTGTG 160297 ||||||| || || ||| ||| || | | |||| ||| || ||| ||||||| || Sbjct 14274 CGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCT-CAGCTACCTGGACCTCCTTCATG 14332 Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 ||||| |||| || | || | ||||| | ||| || ||||| || | ||| Sbjct 14333 AACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAGGCGAGGACG 14392 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 || | |||||| |||| |||||| | | | || | | |||||||| | ||| | Sbjct 14393 TGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGGCGGAGGTCGGAG 14452 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAG 160477 | | ||| || ||||| || |||| || || | || | |||||||| ||||| Sbjct 14453 GAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTCCCAG 14512 Query 160478 AT 160479 || Sbjct 14513 AT 14514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793165294293680