Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 176 7e-39
>seq197427
Length=19924
Score = 176 bits (194), Expect = 7e-39
Identities = 550/842 (65%), Gaps = 26/842 (3%)
Strand=Plus/Plus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT----TCCATGAACCCGAAT 159703
|||||||||||||||| ||||| |||| || | |||| ||||| | | ||
Sbjct 13689 TCTTCTCGAAAAAGTTTGTCTTCCCCTGCAA----ACTGATCAGCTCCATCCAATCAAAC 13744
Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763
|| |||||| | | || || | | || | ||| ||| || ||| || || ||
Sbjct 13745 GGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAACAGCCTATCAGCGACG 13804
Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823
||||| || || | |||| || | || || |||| ||| | || |||||
Sbjct 13805 AATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGAGCACACGGCAGCGCG 13864
Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883
|| | | ||||||| |||| ||||| ||||| |||| |||||| | ||| || ||
Sbjct 13865 TCGCAGACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAATTCCCCTGACTCGCTCC 13924
Query 159884 TACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943
| | | |||| | | | | || |||| | ||| ||||| ||||||||||
Sbjct 13925 TCGCTCAGCTT---CTGAGTCAGCAACTCGTACAGCAAGCAGGCAAAATCGCAGTGCAAG 13981
Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003
|| ||||| | ||||| ||||||||||| | | | | || ||||| | ||| ||| |
Sbjct 13982 CCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGGCATCAACCCGCGCTTT 14041
Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAA 160062
|||||||| || || | |||| |||| ||| || || ||||| || ||| |||||
Sbjct 14042 TTGAGCCAGAAGATCG-CGCAGAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAA 14100
Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTC 160122
|| |||| | ||| | ||||| || ||| | ||||| | |||||| |
Sbjct 14101 GGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTC---GATCCACTTGAGGGCCCACTT 14157
Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182
||||||||| | | ||| || || ||||| |||| || | | ||||| ||| ||
Sbjct 14158 GGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCCGGTCCTTCTCGTT 14217
Query 160183 CACATCCTTGA--TCAGAGT--AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238
|||||||| | || | ||||| ||| ||||||||| | ||| | || |
Sbjct 14218 AGAATCCTTGATGTACGACTCGAGCAAGAGGCT----GTACATTTCGGAGTGGATGTTCT 14273
Query 160239 CGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CTGCACCTCCTGTGTG 160297
||||||| || || ||| ||| || | | |||| ||| || ||| ||||||| ||
Sbjct 14274 CGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCT-CAGCTACCTGGACCTCCTTCATG 14332
Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357
||||| |||| || | || | ||||| | ||| || ||||| || | |||
Sbjct 14333 AACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAGGCGAGGACG 14392
Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417
|| | |||||| |||| |||||| | | | || | | |||||||| | ||| |
Sbjct 14393 TGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGGCGGAGGTCGGAG 14452
Query 160418 GCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAG 160477
| | ||| || ||||| || |||| || || | || | |||||||| |||||
Sbjct 14453 GAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTCCCAG 14512
Query 160478 AT 160479
||
Sbjct 14513 AT 14514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 793165294293680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |