Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq194317 107 2e-18
seq176217 104 3e-17
seq194543 96.9 4e-15
seq160375 95.1 1e-14
seq156113 91.5 2e-13
seq93507 84.2 2e-11
>seq194317
Length=10706
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| |||||| | |||| || |||||||||||||||||
Sbjct 1342 TCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 1401
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | |||||| ||||| | || | || || |||||| |||||| |||| |
Sbjct 1402 ATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTG 1461
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| ||||| || || | || |||||||| || || | ||||| ||
Sbjct 1462 TCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACG 1521
Query 46583 AAGATTTGCATTTT 46596
||||| ||||| ||
Sbjct 1522 AAGATCTGCATCTT 1535
>seq176217
Length=4970
Score = 104 bits (114), Expect = 3e-17
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| ||||| | ||| | ||||| ||| | || ||||||||||||||||| ||||
Sbjct 2518 TGCCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGG 2577
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| || || |||| ||||| ||||||||||| || || | | |||||||| | |
Sbjct 2578 CAAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGG 2637
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541
| | | ||||||||| |||||| |||| | | | ||||| ||| ||
Sbjct 2638 GAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCT---TT 2694
Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || || | ||||||||||| || ||||| || || || || ||||||||
Sbjct 2695 CGACCTCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCAT 2746
Score = 96.9 bits (106), Expect = 4e-15
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||| |||| || || || | || ||||| ||||||||||| ||
Sbjct 2783 CTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCGAGTTGCTTGCCGGCAAA 2842
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | |||||||| | || | | ||||||||| |||||| |||| |
Sbjct 2843 GATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTT 2902
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| ||| ||| || |||| ||||||||||| || ||||| |||||
Sbjct 2903 ATCAATAGTGTCAGAGCT---TTCGACCTCCAAAGTGATGGTTTTTCCTGTCAGGGTTTT 2959
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 2960 CACGAAGATCTGCAT 2974
Score = 91.5 bits (100), Expect = 2e-13
Identities = 138/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| || ||||||| || ||||| |||| || ||||||||||| |||||
Sbjct 1872 TCCTTTTGGATGTTATAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAG 1931
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| | |||||| || | || | | |||||| || ||||||| ||||| |
Sbjct 1932 ATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTA 1991
Query 46523 GCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
| | || ||| ||| || || |||| || || || || || |||| || ||
Sbjct 1992 TCAATTGTATCGGAACTC---TCAACCTCCAAGGTTATAGTCTTCCCGGTCAATGTCTTC 2048
Query 46580 ACAAAGATTTGCATT 46594
||||| || ||||||
Sbjct 2049 ACAAAAATCTGCATT 2063
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | ||| | ||||| |||| || |||||||||||| ||||| || |
Sbjct 2290 TGCCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCG 2349
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
||| || | | | || || || || || || || || |||| | ||||||||| | |
Sbjct 2350 CTAGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGG 2409
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||||| || |||||| ||| | | | | || ||| |||||
Sbjct 2410 GAATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCA 2469
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| || || || || ||||| || || ||||||||
Sbjct 2470 CCTCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518
>seq194543
Length=10949
Score = 96.9 bits (106), Expect = 4e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || || || | || |||||||||||| || |||||| |||||||| || || | |
Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || ||| | || || | |||||| ||||| || ||||| |||||||| || | ||
Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | || || || ||| || ||||| | | | || || |||| ||
Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTC---TCG 3532
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || || |||||||| || || ||||| || |||||||||||
Sbjct 3531 ACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482
>seq160375
Length=3367
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/194 (71%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||| | | || || | || ||||||||||| ||||||||
Sbjct 962 TCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAG 1021
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | | ||||||||| | || | | ||||||||| || ||| ||| | |
Sbjct 1022 ATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATTTTCGCCTTCACGTTA 1081
Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
| | ||||| |||| ||||| |||| |||||||| ||||| |||| || |||
Sbjct 1082 TCAATAGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTTA 1138
Query 46580 ACAAAGATTTGCAT 46593
|||||||| |||||
Sbjct 1139 ACAAAGATCTGCAT 1152
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| || || || | | || || | || || |||||||| ||||||||
Sbjct 506 TCCTTCTGGATGTTATAATCAGCCAAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 565
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | | |||||| || | || | | |||||||||| |||||| ||||| |||
Sbjct 566 ATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 624
Query 46523 GCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | |||||| ||| || || |||| |||||||||||||| |||| || ||
Sbjct 625 GTCGATGGTGTCGGAGCTC---TCAACCTCCAAGGTGATGGTTTTGCCGGTCAAGGTCTT 681
Query 46579 AACAAAGATTTGCAT 46593
||||||||| |||||
Sbjct 682 AACAAAGATCTGCAT 696
>seq156113
Length=3066
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || || || | || |||||||||||| || |||||| ||||| || || || | |
Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || ||| | || || | ||||| || ||||| ||||| |||||||| || | ||
Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | |||||||| ||| || ||| | | | | || || |||| ||
Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTC---TCG 936
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||||| |||||||| || || ||||| || ||||| |||||
Sbjct 935 ACTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq93507
Length=917
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| ||||| | ||| | |||| ||| | || ||||||||||| ||||| ||||
Sbjct 603 TGCCACCTCTGAGACGAAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGG 662
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| || || |||| || || ||||| |||||||| || | | |||||||| | |
Sbjct 663 CAAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 722
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||| |||||| |||| | | | || ||| || |
Sbjct 723 GAATCCCTTCCTTGTCTTGGATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCT 782
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | ||||||||| ||||| || || ||||| ||||| || |||||
Sbjct 783 CCTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATCTGCAT 831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563823869707560
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