Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq194317 107 2e-18 seq176217 104 3e-17 seq194543 96.9 4e-15 seq160375 95.1 1e-14 seq156113 91.5 2e-13 seq93507 84.2 2e-11 >seq194317 Length=10706 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| |||||| | |||| || ||||||||||||||||| Sbjct 1342 TCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 1401 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||| ||||| | || | || || |||||| |||||| |||| | Sbjct 1402 ATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTG 1461 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| ||||| || || | || |||||||| || || | ||||| || Sbjct 1462 TCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACG 1521 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 1522 AAGATCTGCATCTT 1535 >seq176217 Length=4970 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | ||||| ||| | || ||||||||||||||||| |||| Sbjct 2518 TGCCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGG 2577 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || |||| ||||| ||||||||||| || || | | |||||||| | | Sbjct 2578 CAAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGG 2637 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | ||||||||| |||||| |||| | | | ||||| ||| || Sbjct 2638 GAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCT---TT 2694 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | ||||||||||| || ||||| || || || || |||||||| Sbjct 2695 CGACCTCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCAT 2746 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| |||| || || || | || ||||| ||||||||||| || Sbjct 2783 CTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCGAGTTGCTTGCCGGCAAA 2842 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||||| | || | | ||||||||| |||||| |||| | Sbjct 2843 GATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTT 2902 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| ||| || |||| ||||||||||| || ||||| ||||| Sbjct 2903 ATCAATAGTGTCAGAGCT---TTCGACCTCCAAAGTGATGGTTTTTCCTGTCAGGGTTTT 2959 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 2960 CACGAAGATCTGCAT 2974 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| || ||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 1872 TCCTTTTGGATGTTATAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAG 1931 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| || | || | | |||||| || ||||||| ||||| | Sbjct 1932 ATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTA 1991 Query 46523 GCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | || ||| ||| || || |||| || || || || || |||| || || Sbjct 1992 TCAATTGTATCGGAACTC---TCAACCTCCAAGGTTATAGTCTTCCCGGTCAATGTCTTC 2048 Query 46580 ACAAAGATTTGCATT 46594 ||||| || |||||| Sbjct 2049 ACAAAAATCTGCATT 2063 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||| | ||||| |||| || |||||||||||| ||||| || | Sbjct 2290 TGCCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCG 2349 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| || | | | || || || || || || || || |||| | ||||||||| | | Sbjct 2350 CTAGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGG 2409 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||| || |||||| ||| | | | | || ||| ||||| Sbjct 2410 GAATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCA 2469 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| || || || || ||||| || || |||||||| Sbjct 2470 CCTCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518 >seq194543 Length=10949 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || | || |||||||||||| || |||||| |||||||| || || | | Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || ||| | || || | |||||| ||||| || ||||| |||||||| || | || Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | || || || ||| || ||||| | | | || || |||| || Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTC---TCG 3532 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || |||||||| || || ||||| || ||||||||||| Sbjct 3531 ACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482 >seq160375 Length=3367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | | || || | || ||||||||||| |||||||| Sbjct 962 TCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAG 1021 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | | ||||||||| || ||| ||| | | Sbjct 1022 ATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGAATTTTCGCCTTCACGTTA 1081 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| |||| ||||| |||| |||||||| ||||| |||| || ||| Sbjct 1082 TCAATAGTGTCGGAGCTC---TCCACCTCCAAGGTGATGGTCTTGCCGGTCAAGGTCTTA 1138 Query 46580 ACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 1139 ACAAAGATCTGCAT 1152 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| || || || | | || || | || || |||||||| |||||||| Sbjct 506 TCCTTCTGGATGTTATAATCAGCCAAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAG 565 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || | || | | |||||||||| |||||| ||||| ||| Sbjct 566 ATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 624 Query 46523 GCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| || || |||| |||||||||||||| |||| || || Sbjct 625 GTCGATGGTGTCGGAGCTC---TCAACCTCCAAGGTGATGGTTTTGCCGGTCAAGGTCTT 681 Query 46579 AACAAAGATTTGCAT 46593 ||||||||| ||||| Sbjct 682 AACAAAGATCTGCAT 696 >seq156113 Length=3066 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || || | || |||||||||||| || |||||| ||||| || || || | | Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || ||| | || || | ||||| || ||||| ||||| |||||||| || | || Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||| ||| || ||| | | | | || || |||| || Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTC---TCG 936 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| |||||||| || || ||||| || ||||| ||||| Sbjct 935 ACTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq93507 Length=917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| | |||| ||| | || ||||||||||| ||||| |||| Sbjct 603 TGCCACCTCTGAGACGAAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGG 662 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || |||| || || ||||| |||||||| || | | |||||||| | | Sbjct 663 CAAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 722 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||| |||||| |||| | | | || ||| || | Sbjct 723 GAATCCCTTCCTTGTCTTGGATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCT 782 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||| ||||| || || ||||| ||||| || ||||| Sbjct 783 CCTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATCTGCAT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563823869707560