Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq156113 111 1e-19 seq194543 107 1e-18 seq181690 96.9 2e-15 >seq156113 Length=3066 Score = 111 bits (122), Expect = 1e-19 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| | ||| |||| |||||| || || || || || ||||||| Sbjct 1116 CATC-CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAAT 1058 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || |||| |||||||| || || | ||||| || ||||||||||||| Sbjct 1057 CCGCTAGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCG 998 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCT 39665 || | ||||| ||||| ||||| |||| || |||| || || || | ||| Sbjct 997 GAGGAATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATA--GTATCGGAGCT 940 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| || |||||||| || |||| ||||| |||||||||||||| Sbjct 939 CTCGACTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq194543 Length=10949 Score = 107 bits (118), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| | ||| |||| |||||| || || || || |||||||||| Sbjct 3712 CATC-CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAAT 3654 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || |||| ||||| || || ||| ||||||| |||||||||||||| | Sbjct 3653 CTGCTAGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTG 3594 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665 || | |||||||| || ||||| || || ||| || || || | ||| Sbjct 3593 GAGGAATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATA--GTATCAGAGCT 3536 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| ||||||||||| || || | ||||| |||||||| ||||| Sbjct 3535 CTCGACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || || | || | ||| ||||| ||||| || |||||||| Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || | || || | ||||| || |||| |||| |||||||||||||| || Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| || || || ||| ||| | | |||| || || || | |||||| Sbjct 3133 GATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATA--GTATCGGAGCTTTCG 3076 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || ||||| ||||| |||| ||||| |||||||||||||| Sbjct 3075 ACCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/238 (69%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||| || | ||| || || | || | |||| ||| || || || ||||||| Sbjct 3484 CATC-CCGCCACGGAGACGGAGGACTAGGTGAAGAGTGGATTCCTTCTGGATGTTATAAT 3426 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| ||| || |||| |||| ||| || || | || |||| | ||||||||| | Sbjct 3425 CGGCTAAAGTCCGCCCATCTTCCAGTTGCTTTCCAGCGAAGATTAGCCTCTGCTGATCTG 3366 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665 || | ||||| ||||| ||||| || | | |||| || ||||| | ||| Sbjct 3365 GAGGGATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCGATA--GTGTCGGAGCT 3308 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 ||| || || | || || || || || || | ||||| ||||||||||||||| || Sbjct 3307 TTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCATGCCG 3250 >seq181690 Length=5866 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || ||||| || | || || || || || || || | Sbjct 2731 CATC-CCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGT 2789 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || ||| | | |||| |||||||||||||| |||| || || | ||||||||||| Sbjct 2790 CAGCTAAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCG 2849 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCGTCG-CTACTGTGTCTGCGC 39664 || | || || ||||| | | |||||| |||| ||| | | | |||||||| | Sbjct 2850 GCGGAATACCCTCCTTGTC-CTGAATTTTTGCCTTTA--CGTTGTCAATTGTGTCTGAAC 2906 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| |||||||| || || || || || || || || || ||||| ||||| Sbjct 2907 TCTCCACCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346522027185899