Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq156113 111 1e-19
seq194543 107 1e-18
seq181690 96.9 2e-15
>seq156113
Length=3066
Score = 111 bits (122), Expect = 1e-19
Identities = 168/234 (72%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || || | ||| | ||| |||| |||||| || || || || || |||||||
Sbjct 1116 CATC-CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAAT 1058
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| || | || |||| |||||||| || || | ||||| || |||||||||||||
Sbjct 1057 CCGCTAGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCG 998
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCT 39665
|| | ||||| ||||| ||||| |||| || |||| || || || | |||
Sbjct 997 GAGGAATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATA--GTATCGGAGCT 940
Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || ||||| || |||||||| || |||| ||||| ||||||||||||||
Sbjct 939 CTCGACTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq194543
Length=10949
Score = 107 bits (118), Expect = 1e-18
Identities = 166/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || || | ||| | ||| |||| |||||| || || || || ||||||||||
Sbjct 3712 CATC-CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAAT 3654
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| || | || |||| ||||| || || ||| ||||||| |||||||||||||| |
Sbjct 3653 CTGCTAGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTG 3594
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665
|| | |||||||| || ||||| || || ||| || || || | |||
Sbjct 3593 GAGGAATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATA--GTATCAGAGCT 3536
Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || ||||| ||||||||||| || || | ||||| |||||||| |||||
Sbjct 3535 CTCGACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
|||||| || | ||| || || | || | ||| ||||| ||||| || ||||||||
Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
| || | || || | ||||| || |||| |||| |||||||||||||| ||
Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669
| ||||| || || || ||| ||| | | |||| || || || | ||||||
Sbjct 3133 GATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATA--GTATCGGAGCTTTCG 3076
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || | || ||||| ||||| |||| ||||| ||||||||||||||
Sbjct 3075 ACCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026
Score = 91.5 bits (100), Expect = 1e-13
Identities = 165/238 (69%), Gaps = 5/238 (2%)
Strand=Plus/Minus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| ||||| || | ||| || || | || | |||| ||| || || || |||||||
Sbjct 3484 CATC-CCGCCACGGAGACGGAGGACTAGGTGAAGAGTGGATTCCTTCTGGATGTTATAAT 3426
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
|||| ||| || |||| |||| ||| || || | || |||| | ||||||||| |
Sbjct 3425 CGGCTAAAGTCCGCCCATCTTCCAGTTGCTTTCCAGCGAAGATTAGCCTCTGCTGATCTG 3366
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665
|| | ||||| ||||| ||||| || | | |||| || ||||| | |||
Sbjct 3365 GAGGGATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCGATA--GTGTCGGAGCT 3308
Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723
||| || || | || || || || || || | ||||| ||||||||||||||| ||
Sbjct 3307 TTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCATGCCG 3250
>seq181690
Length=5866
Score = 96.9 bits (106), Expect = 2e-15
Identities = 166/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || || || | ||| || ||||| || | || || || || || || || |
Sbjct 2731 CATC-CCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGT 2789
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| || ||| | | |||| |||||||||||||| |||| || || | |||||||||||
Sbjct 2790 CAGCTAAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCG 2849
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCGTCG-CTACTGTGTCTGCGC 39664
|| | || || ||||| | | |||||| |||| ||| | | | |||||||| |
Sbjct 2850 GCGGAATACCCTCCTTGTC-CTGAATTTTTGCCTTTA--CGTTGTCAATTGTGTCTGAAC 2906
Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| ||||| |||||||| || || || || || || || || || ||||| |||||
Sbjct 2907 TCTCCACCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346522027185899
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |