Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq189432 129 7e-25 seq169593 123 3e-23 seq197427 100 4e-16 seq190564 93.3 5e-14 seq181835 89.7 6e-13 >seq189432 Length=7906 Score = 129 bits (142), Expect = 7e-25 Identities = 285/421 (68%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 || || ||||| | ||||| || || || || |||| ||||| |||||| || ||| Sbjct 354 TCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTT--CAA 411 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| |||||||| ||||| |||| || || || | ||| ||||| | | Sbjct 412 ACCCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CC 469 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | |||| | | |||| || || |||||||| ||||||| ||||| ||||| Sbjct 470 TCCGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCA 529 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || || || || ||||| || || | ||| || |||||||| Sbjct 530 AGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAAC 589 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||||||||| | | | | ||| || | || || || || | ||| || | Sbjct 590 AAACATCTCCACAAACTCGGAGCCTGAA-ATGGAGAAAAAAGGAACTCCTGCTTCTCCAG 648 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || ||| ||||| ||||| || || ||||| |||| | || || | ||| Sbjct 649 CAATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAAGCACTCCTT 708 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 || || ||| ||| || | | |||||||| | ||| ||||| ||||| | || Sbjct 709 TAGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCT 768 Query 16333 C 16333 | Sbjct 769 C 769 >seq169593 Length=4175 Score = 123 bits (136), Expect = 3e-23 Identities = 318/473 (67%), Gaps = 15/473 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| | ||||| | || | || | |||||| || ||| | |||||| || Sbjct 246 CGGTCAAACCTGCCTGGCCTTAGCAAAGCTTGATCAAGAATTTCAGGCCTATTCGTGGCA 305 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || ||||||| | || |||||| | ||| |||||||| || |||| ||||||| Sbjct 306 GCAATGACAATGACTCCACTGTTTCC--ACTAAACCCATCCATTTCAGTCAGCAGCTGGT 363 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 ||| ||||| |||| ||||||||| || | | ||| | | | ||| | || | Sbjct 364 TAAGTGTTTGCTCCCTCTCATCATTCCCTCCCCCAATACCGGTCCCTCTCTGCCTCCCGA 423 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 16122 | ||||| |||||||||||||| || | ||| || |||| | || | || | Sbjct 424 CAGCATCTATCTCATCAATGAAAACCAAGCACGGCGAATTTGCCTTTGCCTTGTTGAATA 483 Query 16123 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 |||| ||| |||| || || || || ||||||||||| | || | || |||| Sbjct 484 AGTCCCT--CACTCTTGAAGCTCCGACTCCCACAAACATCTCAATGAACTCTGAACCGGA 541 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 | || ||| || ||| | ||| || |||||||| ||| || || |||||||| Sbjct 542 GAGTGAGAAGAAAGGCACACCGGCTTCTCCAGCAATGGCCTTGGCCAGCAGTGTCTTACC 601 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTC--CAAA 16297 |||||||| || | || || | ||| |||||| |||| | ||||| | |||| Sbjct 602 AGTACCTGGTGGTCCAACTAGTAGCACTCCTTTTGGAATCCTTGCCCCCACTGCAGCAAA 661 Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCAT-CTTTG 16349 | | ||| |||| ||| ||||| || || ||||||| || || | ||||| Sbjct 662 -TTTTTCTGGGGTT-CTT-AGAAACTCAACTATCTCTTGAAAGTCTTGCTTTG 711 >seq197427 Length=19924 Score = 100 bits (110), Expect = 4e-16 Identities = 369/566 (65%), Gaps = 13/566 (2%) Strand=Plus/Minus Query 102059 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATG 102118 ||| || |||||| | |||||| | | ||| || | || ||| | || | || || Sbjct 14233 GTACATCAAGGATTCTAACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGATCCCTTG 14174 Query 102119 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 102178 | ||||||| || | ||||| | |||||| | || | | || || | || || Sbjct 14173 CGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGA--CGGTGGCGAGT-CTTTCGC 14117 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 |||||| || | || ||||| || || || || || |||||||| || ||||||||| Sbjct 14116 CGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCGC 14057 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | |||||||| ||||| || | ||||| || | ||||||||||||| | || Sbjct 14056 GATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGAT 13997 Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGT 102356 ||| | ||||| || | ||| || ||||| | | | || | | | || || | Sbjct 13996 CTCAAGAGACGAAGGCTTGCACTGCGATTTTGCCTGCTTG--CTGTACGAGTTGCTGACT 13939 Query 102357 ATTAAAC-CAACGACTGAGACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGATTGAGA 102414 || | | ||| ||| | | ||| ||||| || || || ||||| |||| Sbjct 13938 CAGAAGCTGAGCGA-GGAG-CGAGTCAGGGGAATTGTGGCCGATGCGGTGGAGATCGAGA 13881 Query 102415 AGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGT 102474 || || | | || || || || || ||||| | || |||||| || |||| Sbjct 13880 GGGAGTTTGTCTGCGACGCGCTGCCGTGTGCTCTGGTGGGCATGAATGGCGATTTGATGA 13821 Query 102475 CCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGT-GCCTCCAATT 102533 | |||||||||| | || ||||||| ||||| | | ||||| ||| Sbjct 13820 GCCAATATATTGAATTCGTCGCTGATAGGCTGTTG-GGTGCTTTGGGGTATGGAAAAATG 13762 Query 102534 TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAAC 102593 | | | |||||||| ||||| | |||||| || || | | |||||||||||| Sbjct 13761 TACGATGCGAAGAATCCGTTTGATTGGATGGAGCTGATCAGTTTGCAGGGGAAGACAAAC 13702 Query 102594 TTCTTCGAAAAGAGGGTTGGGGACTA 102619 || ||||| ||||||||||| || || Sbjct 13701 TTTTTCGAGAAGAGGGTTGGAGAGTA 13676 >seq190564 Length=8368 Score = 93.3 bits (102), Expect = 5e-14 Identities = 216/325 (66%), Gaps = 22/325 (7%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| || || || ||||| |||||||| ||||||| ||||||||| | Sbjct 5512 AAACCATCCATTTCCGTTAACAGCTGATTAATAGTCTGTTCCCTCTCATCATTCCC---- 5567 Query 16035 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||||||| || | | ||| | || || |||||||||||||| || || || Sbjct 5568 --ACCACCAAGCCCCGCCCCTCTTTGTCTCCCAACCGCATCAATCTCATCTATAAACACA 5625 Query 16089 ATGCATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGC 16143 ||||| || |||| ||||| | ||||| | ||| || || | || | Sbjct 5626 ATGCAAGGCGCCTTTGA-CTTCGCCTTC----TCAAACAAATCTCGAACCCTAGACGCCC 5680 Query 16144 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAG 16203 ||||||| ||||||| |||||| || | | |||| || | ||| || ||| | Sbjct 5681 CCACACCCACAAACAACTCCACGAACTCCGACGCGGCGCAGGAAAAGAACGGCACACCGG 5740 Query 16204 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 16263 || ||||| | || || || | ||| || || || |||||||| ||| | | | Sbjct 5741 CCTCTCCCGCCACTGCCCGAGCCAAAAGGGTTTTCCCAGTACCTGGTGGCCCCACCAAAA 5800 Query 16264 GGGCACCTCGTGGAATCTTGGCGCC 16288 | ||| |||||||||||| || Sbjct 5801 GACACCCTTTTGGAATCTTGGCTCC 5825 >seq181835 Length=5898 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGA 111587 || |||| |||| || ||| ||||| |||| ||||| |||| ||||| || Sbjct 2635 AGGGACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCATACCTGTTAAAG 2694 Query 111588 CTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATC 111647 | |||| | |||||| ||||| ||||||| ||| | || || || || ||| Sbjct 2695 GTCCATGGGAAGGTTGTGGAAAGGCCACAACACATGTTAATGAGAGTTGCCATAGGGATC 2754 Query 111648 CATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTC 111707 ||| ||| ||||||||||| || | |||| || || |||||||| | |||| Sbjct 2755 CATAAGGATGATATTGATTCAGTAATTCAGACGTATCACTTGATGTCCCAGAGATGGTTC 2814 Query 111708 ATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | || ||| | || || || ||||| ||||| |||||||| ||||| Sbjct 2815 ACTCATGCATCGCCCACACTTTTCAATGCTGGCACACCAAGGCCCCA 2861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619188968866160