Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq189432 129 7e-25
seq169593 123 3e-23
seq197427 100 4e-16
seq190564 93.3 5e-14
seq181835 89.7 6e-13
>seq189432
Length=7906
Score = 129 bits (142), Expect = 7e-25
Identities = 285/421 (68%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975
|| || ||||| | ||||| || || || || |||| ||||| |||||| || |||
Sbjct 354 TCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTT--CAA 411
Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035
| |||||||| |||||||| ||||| |||| || || || | ||| ||||| | |
Sbjct 412 ACCCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CC 469
Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093
| | | |||| | | |||| || || |||||||| ||||||| ||||| |||||
Sbjct 470 TCCGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCA 529
Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153
|| ||| || || || || ||||| || || | ||| || ||||||||
Sbjct 530 AGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAAC 589
Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212
||||||||||||||| | | | | ||| || | || || || || | ||| || |
Sbjct 590 AAACATCTCCACAAACTCGGAGCCTGAA-ATGGAGAAAAAAGGAACTCCTGCTTCTCCAG 648
Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272
|||| || ||| ||||| ||||| || || ||||| |||| | || || | |||
Sbjct 649 CAATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAAGCACTCCTT 708
Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332
|| || ||| ||| || | | |||||||| | ||| ||||| ||||| | ||
Sbjct 709 TAGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCT 768
Query 16333 C 16333
|
Sbjct 769 C 769
>seq169593
Length=4175
Score = 123 bits (136), Expect = 3e-23
Identities = 318/473 (67%), Gaps = 15/473 (3%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| | ||||| | || | || | |||||| || ||| | |||||| ||
Sbjct 246 CGGTCAAACCTGCCTGGCCTTAGCAAAGCTTGATCAAGAATTTCAGGCCTATTCGTGGCA 305
Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002
|| ||||||| | || |||||| | ||| |||||||| || |||| |||||||
Sbjct 306 GCAATGACAATGACTCCACTGTTTCC--ACTAAACCCATCCATTTCAGTCAGCAGCTGGT 363
Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062
||| ||||| |||| ||||||||| || | | ||| | | | ||| | || |
Sbjct 364 TAAGTGTTTGCTCCCTCTCATCATTCCCTCCCCCAATACCGGTCCCTCTCTGCCTCCCGA 423
Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 16122
| ||||| |||||||||||||| || | ||| || |||| | || | || |
Sbjct 424 CAGCATCTATCTCATCAATGAAAACCAAGCACGGCGAATTTGCCTTTGCCTTGTTGAATA 483
Query 16123 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180
|||| ||| |||| || || || || ||||||||||| | || | || ||||
Sbjct 484 AGTCCCT--CACTCTTGAAGCTCCGACTCCCACAAACATCTCAATGAACTCTGAACCGGA 541
Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
| || ||| || ||| | ||| || |||||||| ||| || || ||||||||
Sbjct 542 GAGTGAGAAGAAAGGCACACCGGCTTCTCCAGCAATGGCCTTGGCCAGCAGTGTCTTACC 601
Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTC--CAAA 16297
|||||||| || | || || | ||| |||||| |||| | ||||| | ||||
Sbjct 602 AGTACCTGGTGGTCCAACTAGTAGCACTCCTTTTGGAATCCTTGCCCCCACTGCAGCAAA 661
Query 16298 GTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCAT-CTTTG 16349
| | ||| |||| ||| ||||| || || ||||||| || || | |||||
Sbjct 662 -TTTTTCTGGGGTT-CTT-AGAAACTCAACTATCTCTTGAAAGTCTTGCTTTG 711
>seq197427
Length=19924
Score = 100 bits (110), Expect = 4e-16
Identities = 369/566 (65%), Gaps = 13/566 (2%)
Strand=Plus/Minus
Query 102059 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATG 102118
||| || |||||| | |||||| | | ||| || | || ||| | || | || ||
Sbjct 14233 GTACATCAAGGATTCTAACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGATCCCTTG 14174
Query 102119 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 102178
| ||||||| || | ||||| | |||||| | || | | || || | || ||
Sbjct 14173 CGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGA--CGGTGGCGAGT-CTTTCGC 14117
Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238
|||||| || | || ||||| || || || || || |||||||| || |||||||||
Sbjct 14116 CGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCGC 14057
Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298
|| | |||||||| ||||| || | ||||| || | ||||||||||||| | ||
Sbjct 14056 GATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGAT 13997
Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGT 102356
||| | ||||| || | ||| || ||||| | | | || | | | || || |
Sbjct 13996 CTCAAGAGACGAAGGCTTGCACTGCGATTTTGCCTGCTTG--CTGTACGAGTTGCTGACT 13939
Query 102357 ATTAAAC-CAACGACTGAGACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGATTGAGA 102414
|| | | ||| ||| | | ||| ||||| || || || ||||| ||||
Sbjct 13938 CAGAAGCTGAGCGA-GGAG-CGAGTCAGGGGAATTGTGGCCGATGCGGTGGAGATCGAGA 13881
Query 102415 AGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGT 102474
|| || | | || || || || || ||||| | || |||||| || ||||
Sbjct 13880 GGGAGTTTGTCTGCGACGCGCTGCCGTGTGCTCTGGTGGGCATGAATGGCGATTTGATGA 13821
Query 102475 CCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGT-GCCTCCAATT 102533
| |||||||||| | || ||||||| ||||| | | ||||| |||
Sbjct 13820 GCCAATATATTGAATTCGTCGCTGATAGGCTGTTG-GGTGCTTTGGGGTATGGAAAAATG 13762
Query 102534 TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAAC 102593
| | | |||||||| ||||| | |||||| || || | | ||||||||||||
Sbjct 13761 TACGATGCGAAGAATCCGTTTGATTGGATGGAGCTGATCAGTTTGCAGGGGAAGACAAAC 13702
Query 102594 TTCTTCGAAAAGAGGGTTGGGGACTA 102619
|| ||||| ||||||||||| || ||
Sbjct 13701 TTTTTCGAGAAGAGGGTTGGAGAGTA 13676
>seq190564
Length=8368
Score = 93.3 bits (102), Expect = 5e-14
Identities = 216/325 (66%), Gaps = 22/325 (7%)
Strand=Plus/Plus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
||||||||||| || || || ||||| |||||||| ||||||| ||||||||| |
Sbjct 5512 AAACCATCCATTTCCGTTAACAGCTGATTAATAGTCTGTTCCCTCTCATCATTCCC---- 5567
Query 16035 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088
||||||| || | | ||| | || || |||||||||||||| || || ||
Sbjct 5568 --ACCACCAAGCCCCGCCCCTCTTTGTCTCCCAACCGCATCAATCTCATCTATAAACACA 5625
Query 16089 ATGCATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGC 16143
||||| || |||| ||||| | ||||| | ||| || || | || |
Sbjct 5626 ATGCAAGGCGCCTTTGA-CTTCGCCTTC----TCAAACAAATCTCGAACCCTAGACGCCC 5680
Query 16144 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAG 16203
||||||| ||||||| |||||| || | | |||| || | ||| || ||| |
Sbjct 5681 CCACACCCACAAACAACTCCACGAACTCCGACGCGGCGCAGGAAAAGAACGGCACACCGG 5740
Query 16204 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 16263
|| ||||| | || || || | ||| || || || |||||||| ||| | | |
Sbjct 5741 CCTCTCCCGCCACTGCCCGAGCCAAAAGGGTTTTCCCAGTACCTGGTGGCCCCACCAAAA 5800
Query 16264 GGGCACCTCGTGGAATCTTGGCGCC 16288
| ||| |||||||||||| ||
Sbjct 5801 GACACCCTTTTGGAATCTTGGCTCC 5825
>seq181835
Length=5898
Score = 89.7 bits (98), Expect = 6e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGA 111587
|| |||| |||| || ||| ||||| |||| ||||| |||| ||||| ||
Sbjct 2635 AGGGACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCATACCTGTTAAAG 2694
Query 111588 CTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATC 111647
| |||| | |||||| ||||| ||||||| ||| | || || || || |||
Sbjct 2695 GTCCATGGGAAGGTTGTGGAAAGGCCACAACACATGTTAATGAGAGTTGCCATAGGGATC 2754
Query 111648 CATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTC 111707
||| ||| ||||||||||| || | |||| || || |||||||| | ||||
Sbjct 2755 CATAAGGATGATATTGATTCAGTAATTCAGACGTATCACTTGATGTCCCAGAGATGGTTC 2814
Query 111708 ATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754
| || ||| | || || || ||||| ||||| |||||||| |||||
Sbjct 2815 ACTCATGCATCGCCCACACTTTTCAATGCTGGCACACCAAGGCCCCA 2861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619188968866160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |