Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq189432 140 4e-28 seq181835 125 8e-24 seq169593 111 2e-19 seq190564 100 3e-16 seq180626 84.2 3e-11 >seq189432 Length=7906 Score = 140 bits (154), Expect = 4e-28 Identities = 290/423 (69%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 || || ||||| | ||||| ||||| || || |||| ||||| |||||| || ||| Sbjct 354 TCCAGAATATCTGCACGATTAGTCGCTGCAATTACAATGATACCCGTGTTTCCTT--CAA 411 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| |||||||| || || |||| || || || | ||| ||||| | | Sbjct 412 ACCCATCCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCA--CC 469 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | |||| || || |||||||| ||||||| |||||||| || Sbjct 470 TCCGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATGCA 529 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| ||| || ||||| || || || ||| || |||||||| Sbjct 530 AGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCAAC 589 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||||||||| | | | | ||| || | || || || || | ||| || | Sbjct 590 AAACATCTCCACAAACTCGGAGCCTGAA-ATGGAGAAAAAAGGAACTCCTGCTTCTCCAG 648 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || ||| ||||| ||||| || || ||||| |||| | || | |||| || Sbjct 649 CAATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAA--GCACTCC 706 Query 9580 GT--GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAAT 9637 | || || ||| ||| || | | |||||||| | ||| ||||| ||||| | Sbjct 707 TTTAGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCAC 766 Query 9638 CTC 9640 ||| Sbjct 767 CTC 769 >seq181835 Length=5898 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || |||||||| ||||||||||| || || || | ||| ||| ||||| | || Sbjct 2862 CTGGGGCCTTGGTGTGCCAGCATTGAAAAGTGTGGGCGATGCATGAGTGAACCATCTCTG 2803 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||||| || || |||| | || |||||||| || ||| ||||| || ||||| Sbjct 2802 GGACATCAAGTGATACGTCTGAATTACTGAATCAATATCATCCTTATGGATCCCTATGGC 2743 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| ||| || |||||| | | |||| || || || | || | Sbjct 2742 AACTCTCATTAACATGTGTTGTGGCCTTTCCACAACCTTCCCATGGA-CCTTTAACAGGT 2684 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | | ||||||||||||||| ||||||||| || | ||| |||||| Sbjct 2683 ATGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCC 2636 >seq169593 Length=4175 Score = 111 bits (122), Expect = 2e-19 Identities = 313/471 (66%), Gaps = 11/471 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| | ||||| | || | || | |||||| || ||| | |||||| || Sbjct 246 CGGTCAAACCTGCCTGGCCTTAGCAAAGCTTGATCAAGAATTTCAGGCCTATTCGTGGCA 305 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 || ||||||| | || |||||| | ||| |||||||| || |||| || |||| Sbjct 306 GCAATGACAATGACTCCACTGTTTCC--ACTAAACCCATCCATTTCAGTCAGCAGCTGGT 363 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 ||| ||||| |||| ||||||||| || | | ||| | | | ||| | || | Sbjct 364 TAAGTGTTTGCTCCCTCTCATCATTCCCTCCCCCAATACCGGTCCCTCTCTGCCTCCCGA 423 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | ||||| |||||||||||||| || | || || |||| | || | | || | Sbjct 424 CAGCATCTATCTCATCAATGAAAACCAAGCACGGCGAATTTGCCTTTGCCTTGTTGAATA 483 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 || | || ||| || || || || ||||||||||| | || | || |||| Sbjct 484 AGTCCCTCACTCTTGAAGCTCCGACTCCCACAAACATCTCAATGAACTCTGAACCGGAGA 543 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | || ||| || ||| | ||| || |||||||| ||| || || |||||||| | Sbjct 544 GTGAGAAGAAAGGCACACCGGCTTCTCCAGCAATGGCCTTGGCCAGCAGTGTCTTACCAG 603 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT-CTTGGCGCCACTTC--CAAAGT 9606 ||||||| || | || || | || |||||| |||| | ||||| | |||| | Sbjct 604 TACCTGGTGGTCCAACTAGTAGCACTCCTTTTGGAATCCTTGCCCCCACTGCAGCAAA-T 662 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCAT-CTTTG 9656 | ||| |||| ||| ||||| || || ||||||| || || | ||||| Sbjct 663 TTTTCTGGGGTT-CTT-AGAAACTCAACTATCTCTTGAAAGTCTTGCTTTG 711 >seq190564 Length=8368 Score = 100 bits (110), Expect = 3e-16 Identities = 216/321 (67%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || || || || || |||||||| ||||||| ||||||||| | Sbjct 5512 AAACCATCCATTTCCGTTAACAGCTGATTAATAGTCTGTTCCCTCTCATCATTCCC---- 5567 Query 9342 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||||||| || | | ||| | || || |||||||||||||| || || ||| Sbjct 5568 --ACCACCAAGCCCCGCCCCTCTTTGTCTCCCAACCGCATCAATCTCATCTATAAACACA 5625 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || ||| || | ||||| | ||| |||||||| || |||||| Sbjct 5626 ATGCAAGGCGCCTTTGACTTCGCCTTCTCAAACAAATCTCGAACCCTAGACGCCCCCACA 5685 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||||| |||||| || | | |||| || | ||| || ||| | || Sbjct 5686 CCCACAAACAACTCCACGAACTCCGACGCGGCGCAGGAAAAGAACGGCACACCGGCCTCT 5745 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 ||||| | || || || | ||| || || || |||||||| ||| | | | | || Sbjct 5746 CCCGCCACTGCCCGAGCCAAAAGGGTTTTCCCAGTACCTGGTGGCCCCACCA-AAAGACA 5804 Query 9576 CCC-CGTGGAATCTTGGCGCC 9595 ||| |||||||||||| || Sbjct 5805 CCCTTTTGGAATCTTGGCTCC 5825 >seq180626 Length=5659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||||| || |||||||| ||||| || | ||| ||| ||||| | || Sbjct 2495 TGGGGCCTTGGTGCCCCTGCATTGAAAAGGGTAGGCGATGCATGAGTGAACCATCTCTGA 2436 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | || |||| | |||||||||| || ||| |||||| || | | Sbjct 2435 GACATCAAATGATAGGTCTTGATAGCAGAATCAATATCATCCTTGTGGATCCCAACAGAA 2376 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| ||| || |||| | | | || | || || | | || || Sbjct 2375 ACCCTCATCAACATGTGTTGAGGCCTTTCAACAACTTTTCCTTGGA-CCTTCAACAGGTA 2317 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||||||||||||||| |||||||||| || | || |||| || Sbjct 2316 GGATCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCGAAGTCACG 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588504350923720