Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq198569 214 2e-50 seq199332 187 3e-42 seq197706 129 7e-25 seq198282 125 8e-24 seq197127 123 3e-23 seq195632 113 5e-20 seq200167 105 8e-18 seq182658 105 8e-18 seq198106 93.3 5e-14 seq198552 91.5 2e-13 seq198484 91.5 2e-13 seq198248 87.8 2e-12 seq198258 84.2 3e-11 >seq198569 Length=8129 Score = 214 bits (236), Expect = 2e-50 Identities = 320/453 (71%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 169729 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTT 169788 || ||||| | |||||||||| | | | || || ||||| |||||||| |||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 169789 GCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAG 169848 ||||| || || || || | ||||| ||||| ||||| | || ||| ||||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 169849 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTT 169908 || || |||||||| ||||| ||||| ||||| |||||||||||||| ||| |||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 169909 TTCCAAGCAGAGCATAACATTCTAATGCATCC-TTTCCACATGGCAGGAGTAGCAGGAAT 169967 ||||| || ||||| || || || ||||| || |||| | ||| ||| ||||| || | Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 169968 GTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAG 170027 || | || ||| ||||| || ||||||||||| |||| || | ||||||||| Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAG 3074 Query 170028 AGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAAC 170087 ||||| || || || | || || | || || ||||| || ||||| Sbjct 3075 GGAAACCACCCCGC----------TAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 170088 ATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATT 170147 || || || ||||| || || ||||| ||||| || | |||||||| |||||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 170148 CAACAACTCAAGAAGTCTACACTTCTTCCTAGC 170180 ||||||||| | | |||| || |||||||| Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq199332 Length=2940 Score = 187 bits (206), Expect = 3e-42 Identities = 327/473 (69%), Gaps = 15/473 (3%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| |||||| ||||| || || |||| ||||| ||| Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | ||||||| || | | | || |||||||| ||| || ||||| Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || |||||||||||||| || | || || ||| | ||||| || |||||| || Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCA---TAGTCTT--CTGTTCCTTT 170763 || || |||||||| || |||| ||| | | | || |||| |||| || | Sbjct 2357 ACCGCGGCAGTTTCTACTCCTG-----CTAATAGTTTACTTTACTCTTTGTTGTTACTAT 2303 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| || ||||||||||| ||| |||||||| ||| | || ||| | |||| | Sbjct 2302 GGGGTCCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGT 2243 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATA----GGTTTCATGCTCAGACAATTTGAG 170879 |||| || | || || | |||||||| ||| |||||||| || |||||||| Sbjct 2242 TTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAA 2184 Query 170880 ATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCA 170939 | || || ||| | ||||||| || ||| |||||||||||||| || || Sbjct 2183 CTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCG 2124 Query 170940 GTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTT 170992 || || | | || ||||| ||||| ||||||||| |||||||||| Sbjct 2123 GTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071 >seq197706 Length=393 Score = 129 bits (142), Expect = 7e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || |||||||| || ||||| |||||||| || || || | ||||| || | || ||| Sbjct 153 GCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCT 212 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 | | ||||| ||||| || ||||| ||||| || |||| | || ||||| || Sbjct 213 CTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGC 272 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | ||||| ||||| || |||||||| ||| | |||||||||||||| || ||||| ||| Sbjct 273 TTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGT 332 Query 169684 CCTTATCAG 169692 |||||| || Sbjct 333 CCTTATGAG 341 >seq198282 Length=4172 Score = 125 bits (138), Expect = 8e-24 Identities = 198/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||| Sbjct 6 ACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 65 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 66 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 125 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 |||||||| || ||||| | || || || || || ||||| || || | ||||| ||| Sbjct 126 GGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 185 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || |||||||||||||| || || || || | ||||| ||||| | || Sbjct 186 GATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTCGTGCT 245 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCC 171532 |||||| | | || || || ||||| ||| | ||||||| Sbjct 246 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289 >seq197127 Length=16832 Score = 123 bits (136), Expect = 3e-23 Identities = 121/155 (78%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 169819 GCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 169878 ||||| ||||| | || ||| ||||||| || || |||||||| ||||| ||||| Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 169879 ATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCAT 169938 ||||| |||||||||||||| ||| |||| ||||| || ||||| || || || ||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 169939 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGG 169973 || || |||||| ||| ||||| || ||||||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678 >seq195632 Length=12301 Score = 113 bits (124), Expect = 5e-20 Identities = 133/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 153255 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 153314 ||| || | |||||||| |||||||||| |||||||| || ||||||||||| || Sbjct 2121 AACATTATGGAGAATCCGGGTTGGTACACCCAGTACACTCCTTACCAAGCTGAGATTTCG 2180 Query 153315 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTA 153374 ||||| | ||||| | | | |||||||| || | || ||||| || || || | Sbjct 2181 CAGGGTCGTTTGGAGTCCCTGCTTAATTACCAGACCATGATTACAGATCTCACTGGTCTC 2240 Query 153375 CCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT 153432 || || ||||||| || || ||||||||| |||||| || ||||| ||||| ||||| Sbjct 2241 CCCATGTCAAACGCGTCCTTACTAGATGAAGGAACTGCTGCGGCAGAGGCAATGGCTAT 2299 >seq200167 Length=15642 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||| ||||| |||||||||||||| ||| ||| ||||| || ||||| Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || ||||| || || |||||| ||| ||||| || | || || || || | Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 169983 ATTCTCAGCAATGCATGGTTC 170003 ||| | ||||||||||| Sbjct 10706 GTTCAGTACTATGCATGGTTC 10686 >seq182658 Length=6062 Score = 105 bits (116), Expect = 8e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGG-TAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 ||||||| ||| || | | | || |||||||| |||| ||||| |||||||||||||| Sbjct 1969 GATATTGTTGTTGGATCGGCT-CAGAGGTTTGGAGTTCCAATGGGGTATGGAGGTCCTCA 2027 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 153865 ||| || ||| | || || | | | || ||| ||| ||| ||||| || ||| | || Sbjct 2028 TGCAGCTTTCCTGGCCACTTCCCAAGACTACAAGCGAATGATGCCTGGGAGGATTATTGG 2087 Query 153866 TCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 | | || ||| | || || ||| | | | ||| | || || || ||||| Sbjct 2088 TGTGAGTGTTGATTCTTCGGGAAAACCAGCTTTGCGTATGGCAATGCAAACGAGGGAGCA 2147 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 |||||| ||||||||||| |||||||| || ||||| || || |||| Sbjct 2148 GCATATTAGGAGAGACAAGGCAACCAGCAATATCTGTACTGCCCAGG 2194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 |||||| ||||| |||||||| || | || ||||||||||||||||||||||| || || Sbjct 5605 TGGTGCTGATGTTTGTCATCTCAATCTCCACAAAACATTCTGTATTCCACATGGTGGAGG 5664 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | |||||||| ||||| Sbjct 5665 TGGTCCTGGCATGGGTCCTATTGGTGT 5691 >seq198106 Length=2703 Score = 93.3 bits (102), Expect = 5e-14 Identities = 361/565 (64%), Gaps = 12/565 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| || || ||||||| || ||| | |||| || Sbjct 367 TTTGATATTATGGATGACTGGTTACGAAGGGACAGTTTTGTTTTTGGAGGCTAGTCTAGT 426 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 | || || | |||||||| || | | ||||||||||||| |||| | ||||| Sbjct 427 TTATTGCTCTTTCCTTGTGCCTATTTCACTTTCGGTGGTTGGTTTATAGGTATGACCTTT 486 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || || | || || || || || || Sbjct 487 GTAACCTCATGGTATACTCATGGATTGGCCAGTTCTAATTTGGAAGGCTGCAATTTATTA 546 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 ||| | ||||| || | | | | ||| | | |||| ||| Sbjct 547 ACAACCTTTGTTTCTACTTCAACTAATAGTTTAGCCCATTCTTTGTTGTTACTT------ 600 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 ||||||| |||| ||| | |||||| ||| | || ||| | |||| ||||| Sbjct 601 --TGAAGCAGAAGGAGATTTTACTTGTTGGTGTCAATTAGGTGGTATGTGGACTTTTGTT 658 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | ||||| | |||| ||| |||||||||||| | | ||||| || | || | Sbjct 659 GCTCTTCATGGCGCTTTTGCACTAATAGGTTTCATGGTATGTCAATTCGAACTTGCTCAA 718 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| | |||||||| || | || ||| | Sbjct 719 TCTGTTCAATTATGACCTTATAATGCAATTGCATTCTCAAGACCAATTGTTGTTTTCGTT 778 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCA--TTCG 171006 | || ||||| |||||||| ||| || ||||||| || | | ||| || | Sbjct 779 TTTGTATTCCTGATTTATCCACTCGGTTAGTTTGGTTGGTTTTTTTGAGC-TCAGCTTTG 837 Query 171007 GTGTCGCAGCAATTTTTCGTTATAT-CTTATTCATACAAGGTTTCCACAACATTACATTG 171065 |||| |||| || ||| | | || ||| || | |||| || || || |||||| Sbjct 838 GTGTATCAGCTATATTTTGATTCATCCTTTTTTTTTCAAGAGTTTCATAATTGGACATTG 897 Query 171066 AATCCATTTCACATGATGGGTGTTG 171090 || | | |||| ||||| | |||| Sbjct 898 AACCTAGTTCATATGATTAGAGTTG 922 >seq198552 Length=7756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| ||||||||| Sbjct 4120 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGCTGGTCTGGT 4179 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 | || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 4180 TTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACCACCTTT 4239 Query 170649 GTTACATCATGGTATACACATGG 170671 || || ||||||||||| ||||| Sbjct 4240 GTAACTTCATGGTATACTCATGG 4262 >seq198484 Length=6561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 170242 TTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACA 170301 || ||||||||||| || |||||||| || |||||| | | || | | || Sbjct 6231 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACC 6290 Query 170302 TGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCA 170361 |||| ||| | | ||| | || ||| | ||||||||||||||||||||| | ||||| Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350 Query 170362 CACAACTTCCCACTAGACCTAGC 170384 || |||||||| ||||||||||| Sbjct 6351 CATAACTTCCCTCTAGACCTAGC 6373 >seq198248 Length=3867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 170170 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACA 170229 || |||||||| | || ||||| ||| || | ||||| || || | |||||| |||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 170230 ATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 ||||| ||||| | ||||||||||| || |||||||| || |||||| Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 284 >seq198258 Length=3934 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 169859 CTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAG 169918 ||| ||| ||||| | || || || ||||||||||||| || |||| ||| | || | Sbjct 3138 CTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTG 3197 Query 169919 AGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGAT 169978 |||| || || || | || || || |||||| ||| ||||| || | ||||| || | Sbjct 3198 AGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 3257 Query 169979 CTTTATTCTCAGCAATGCATGGTTCACTTGT 170009 || |||| || ||||||||||| |||| Sbjct 3258 CTCTATTTAGTGCTATGCATGGTTCCTTTGT 3288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577763298247520