Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq198569 255 7e-63 seq197706 149 7e-31 seq197127 134 2e-26 seq200167 129 7e-25 seq198258 113 5e-20 seq198484 91.5 2e-13 seq197639 86.0 7e-12 >seq198569 Length=8129 Score = 255 bits (282), Expect = 7e-63 Identities = 329/453 (73%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877 || |||||| | |||||||| | | | | | |||||| |||||||||| |||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 168937 || |||||||| || || | || || ||| || ||| | | || ||| ||||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 168938 GGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTA 168997 || ||| |||||||| |||||||||||||| ||||| || |||||||||||| ||||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 168998 TTCCAAGCAGAGCACAACATTCTTATGCATCC-CTTCCATATGGCAGGAGTAGCAGGTAT 169056 ||||| || |||||||| || |||||||| || ||| ||||| ||| ||||| ||| | Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 169057 GTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAG 169116 || | || ||||||||| || ||||||||||| | ||| | ||||||||| Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGTAGC-----TTCTAATCAG 3074 Query 169117 AGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 169176 || || || | || || | || |||| || |||||||| || ||||| Sbjct 3075 GGAAACCACCCCG-------CT---AATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 169177 CTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTT 169236 ||||||||||| || || ||||| || || || |||| |||||||| ||||| ||||| Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 169237 CAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 ||||||||| | | | || || |||||||| Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq197706 Length=393 Score = 149 bits (164), Expect = 7e-31 Identities = 205/284 (72%), Gaps = 11/284 (4%) Strand=Plus/Plus Query 168504 TAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCC-ATGT 168562 |||| |||||||| ||| | ||||| |||| |||| ||||| || |||||||| | | Sbjct 55 TAACTAGCACTAAAAACTGTCTTTACATTGGATGGTATGGTGTTTTGATGATCCCTACGG 114 Query 168563 T--------TATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCT 168613 ||||||| ||| | | ||| || ||| | || || |||||||| || || Sbjct 115 ACCCCACCCTATTAACTGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCCTCCA 173 Query 168614 GTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATC 168673 |||||||| || || || | |||||||| | || ||||| | ||||| ||||| || Sbjct 174 GTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGAACAATATT 233 Query 168674 ATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGG 168733 ||||||||||| || |||| |||| || || || | ||||| ||||| || ||| Sbjct 234 ATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACCCGATATGG 293 Query 168734 GAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 ||||| || | | ||||| |||||||| ||||| |||||||| Sbjct 294 GAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTA 337 >seq197127 Length=16832 Score = 134 bits (148), Expect = 2e-26 Identities = 124/156 (79%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 ||| || ||| | | || ||| ||||||| || ||| |||||||| ||||||||||| Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 ||| ||||| || |||||||||||| |||||||||| || |||||||| || |||||||| Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGG 169062 || || || ||| ||| ||||| || ||||||| Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678 >seq200167 Length=15642 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 168952 TGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCA 169011 |||||||||||||||||| ||||| || |||||||| ||| ||||||||| || ||||| Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 169012 CAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCT 169071 |||||| |||||||| || || || ||| ||| ||||| ||| | || ||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 169072 ATTCTCCGCAATGCATGGTTC 169092 ||| | ||||||||||| Sbjct 10706 GTTCAGTACTATGCATGGTTC 10686 >seq198258 Length=3934 Score = 113 bits (124), Expect = 5e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 168948 CTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAG 169007 ||| ||| |||||| | ||||| ||| | || ||||||||| || |||||||| | || | Sbjct 3138 CTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTG 3197 Query 169008 AGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGAT 169067 ||||||| || ||| | || || || || ||| ||| ||||| ||| | ||||| || | Sbjct 3198 AGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 3257 Query 169068 CTCTATTCTCCGCAATGCATGGTTCACTTGTA 169099 ||||||| || ||||||||||| ||||| Sbjct 3258 CTCTATTTAGTGCTATGCATGGTTCCTTTGTA 3289 >seq198484 Length=6561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 || || || || || || |||||||| || || ||| | | || | ||| ||| Sbjct 6231 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACC 6290 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| || | ||||| | || ||||||||||||||||| |||||||| ||||| ||| Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350 Query 169451 CACAACTTCCCACTAGACTTAGC 169473 || |||||||| |||||| |||| Sbjct 6351 CATAACTTCCCTCTAGACCTAGC 6373 >seq197639 Length=228 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 169404 TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCAC 169463 ||||| | || ||||||||||||||||| |||||||| ||||| ||||| |||||||| | Sbjct 179 TTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTC 120 Query 169464 TAGACTTAGC 169473 ||||| |||| Sbjct 119 TAGACCTAGC 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563029063729440