Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 217 2e-51
seq199332 141 1e-28
seq197706 138 1e-27
seq198282 129 7e-25
seq195632 120 4e-22
seq182658 98.7 1e-15
seq198552 96.9 4e-15
seq198484 91.5 2e-13
seq198248 82.4 9e-11
>seq198569
Length=8129
Score = 217 bits (240), Expect = 2e-51
Identities = 327/455 (72%), Gaps = 20/455 (4%)
Strand=Plus/Plus
Query 172147 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTA 172206
|| ||||| | |||||||||| | | | || |||||| |||| ||||| |||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 172207 GCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAG 172266
||||||||||| ||||| |||| || |||||| ||| | | |||||| | |||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 172267 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTG 172326
|| || |||||||| ||||| ||||| ||||| ||||| |||||||| ||| ||||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 172327 TTCCAAGCAGAGCATAACATTCTAATGCATCC-TTTCCACATGGCAGGAGTAGCAGGAAT 172385
||||| || ||||| || || || ||||| || |||| | ||| ||| ||||| || |
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGG--T 3017
Query 172386 GT-TTGGA-GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATC 172443
|| ||||| || ||| ||||| || ||||| ||||| || || | || |||||||
Sbjct 3018 GTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGT---AGCT--TCTAATC 3072
Query 172444 AGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAA 172503
|| || || || || ||| ||| || |||| || || ||||| || |||
Sbjct 3073 AGGGAAACCAC-CCCGC-TAAT----GAA----GGGTACAGATTTGGTCAAGAGGAGGAA 3122
Query 172504 ACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 172563
|| || || || ||||| || || ||||| ||||| || | |||||||| |||||| |
Sbjct 3123 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3182
Query 172564 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598
||||||||||| | | | || || ||||||||
Sbjct 3183 TTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq199332
Length=2940
Score = 141 bits (156), Expect = 1e-28
Identities = 280/411 (68%), Gaps = 15/411 (4%)
Strand=Plus/Minus
Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010
|||||| || | || ||||||||| |||||| |||||||| || | || ||||| |||
Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478
Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070
|| || || | ||||||| || | | | || |||||||| ||| || |||||
Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418
Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130
|| || |||||||||||||| || | || ||| ||| | || || ||||| |||
Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358
Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCA---TAGTCTT--CTGTTCCTTT 173185
|| || ||||| || || |||| ||| | | | || |||| |||| || |
Sbjct 2357 ACCGCGGCAGTTTCTACTCCTG-----CTAATAGTTTACTTTACTCTTTGTTGTTACTAT 2303
Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245
|||| || ||||||||||| || ||||||| ||| | || || || |||| |
Sbjct 2302 GGGGTCCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGT 2243
Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATA----GGTTTCATGCTCCGTCAGTTTGAG 173301
|||| || | || || | |||||||| ||| |||||||| |||| |||||
Sbjct 2242 TTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAA 2184
Query 173302 ATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCT 173352
| || || ||| | ||||||| || ||| ||||||||||||||
Sbjct 2183 CTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCT 2133
>seq197706
Length=393
Score = 138 bits (152), Expect = 1e-27
Identities = 144/189 (76%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981
|| |||||||| || ||||| |||||||| || || || | ||||| ||| | || |||
Sbjct 153 GCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCT 212
Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041
| | ||||| ||||| || ||||| ||||| || |||| | || || |||||
Sbjct 213 CTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGC 272
Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101
| ||||| ||||| || |||||||| ||| |||| ||||||||||| |||||||| |||
Sbjct 273 TTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGT 332
Query 172102 CCTTATCAG 172110
|||||| ||
Sbjct 333 CCTTATGAG 341
>seq198282
Length=4172
Score = 129 bits (142), Expect = 7e-25
Identities = 199/284 (70%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730
|| || ||| | || ||||| || || ||||| | || ||||| || ||| | | |||
Sbjct 6 ACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 65
Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790
|| ||| | ||||| || ||||| || | ||| | |||| | | || | ||
Sbjct 66 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 125
Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850
||||| || || ||||| | || || ||||| || ||||| || || | ||||| |||
Sbjct 126 GGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 185
Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910
||||| || || |||||||||||||| || || || || | ||||| ||||| | ||
Sbjct 186 GATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTCGTGCT 245
Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCC 173954
|||||| | || |||||| || ||||| ||| | |||| ||
Sbjct 246 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289
>seq195632
Length=12301
Score = 120 bits (132), Expect = 4e-22
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 157930 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 157989
||| || | |||||||| |||||||||| |||||||| || ||||||||||| ||
Sbjct 2121 AACATTATGGAGAATCCGGGTTGGTACACCCAGTACACTCCTTACCAAGCTGAGATTTCG 2180
Query 157990 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTA 158049
||||| | ||||| | | | |||||||| || | || ||||| ||||| || ||
Sbjct 2181 CAGGGTCGTTTGGAGTCCCTGCTTAATTACCAGACCATGATTACAGATCTCACTGGTCTC 2240
Query 158050 CCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103
|| || ||||||| || || ||||||||| |||||| || ||||| ||||||
Sbjct 2241 CCCATGTCAAACGCGTCCTTACTAGATGAAGGAACTGCTGCGGCAGAGGCAATG 2294
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613
|||||||||| || |||||||| || | ||| | ||| |||||||||||||
Sbjct 6066 TTACATATCCTTCGACACATGGGGTTTACGAAGAAGGCATTGATGAGATATGTAAGATAA 6125
Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGT 159672
| ||||| ||||||||||| || || | ||||| || || | |||||||||||||||
Sbjct 6126 TACATGATAATGGTGGTCAAGTTTACATGGATGGGGCCAACATGAATGCACAGGTAGGT 6184
>seq182658
Length=6062
Score = 98.7 bits (108), Expect = 1e-15
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
|||||| ||||| |||||||| || | || || |||||||||||||||||||| || ||
Sbjct 5605 TGGTGCTGATGTTTGTCATCTCAATCTCCACAAAACATTCTGTATTCCACATGGTGGAGG 5664
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779
||||||||| | ||||||||||||||
Sbjct 5665 TGGTCCTGGCATGGGTCCTATTGGTGT 5691
Score = 82.4 bits (90), Expect = 9e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613
|||||||||| || |||||||| || | ||| | ||| | |||||||||||
Sbjct 4675 TTACATATCCTTCAACACATGGAGTTTACGAAGAAGGCATTGATGAAATATGTAAGATAA 4734
Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668
||||||| ||||| ||||| || ||| | |||||||| || | |||||||||||
Sbjct 4735 TTCATGACAATGGGGGTCAAGTTTATATGGATGGTGCCAACATGAATGCACAGGT 4789
>seq198552
Length=7756
Score = 96.9 bits (106), Expect = 4e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010
|||||| || | || ||||||||| ||| || || ||||| || | || |||||||||
Sbjct 4120 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGCTGGTCTGGT 4179
Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070
| || || | |||||||| || | || | || ||||||||| ||| || |||||
Sbjct 4180 TTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACCACCTTT 4239
Query 173071 GTTACATCATGGTATACACATGGTAT 173096
|| || ||||||||||| ||||| ||
Sbjct 4240 GTAACTTCATGGTATACTCATGGCAT 4265
>seq198484
Length=6561
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 172663 AACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGG 172722
|| |||||||| ||||||||||| || || ||| | | || | || ||| |||
Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293
Query 172723 GGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACAC 172782
| || | ||||| | || ||||| ||||||||||||||||||||| | ||||| ||
Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353
Query 172783 AACTTCCCATTAGACCTTGC 172802
|||||||| ||||||| ||
Sbjct 6354 AACTTCCCTCTAGACCTAGC 6373
>seq198248
Length=3867
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 172588 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 172647
|| |||||||| | || ||||| ||| || | ||||| || || | |||||| | ||
Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332
Query 172648 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695
||||| ||||| || || |||||||| ||||||||||| || || |||
Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 586579579820080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |