Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq198569 217 2e-51 seq199332 141 1e-28 seq197706 138 1e-27 seq198282 129 7e-25 seq195632 120 4e-22 seq182658 98.7 1e-15 seq198552 96.9 4e-15 seq198484 91.5 2e-13 seq198248 82.4 9e-11 >seq198569 Length=8129 Score = 217 bits (240), Expect = 2e-51 Identities = 327/455 (72%), Gaps = 20/455 (4%) Strand=Plus/Plus Query 172147 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTA 172206 || ||||| | |||||||||| | | | || |||||| |||| ||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 172207 GCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAG 172266 ||||||||||| ||||| |||| || |||||| ||| | | |||||| | ||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 172267 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTG 172326 || || |||||||| ||||| ||||| ||||| ||||| |||||||| ||| |||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 172327 TTCCAAGCAGAGCATAACATTCTAATGCATCC-TTTCCACATGGCAGGAGTAGCAGGAAT 172385 ||||| || ||||| || || || ||||| || |||| | ||| ||| ||||| || | Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGG--T 3017 Query 172386 GT-TTGGA-GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATC 172443 || ||||| || ||| ||||| || ||||| ||||| || || | || ||||||| Sbjct 3018 GTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGT---AGCT--TCTAATC 3072 Query 172444 AGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAA 172503 || || || || || ||| ||| || |||| || || ||||| || ||| Sbjct 3073 AGGGAAACCAC-CCCGC-TAAT----GAA----GGGTACAGATTTGGTCAAGAGGAGGAA 3122 Query 172504 ACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 172563 || || || || ||||| || || ||||| ||||| || | |||||||| |||||| | Sbjct 3123 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3182 Query 172564 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 ||||||||||| | | | || || |||||||| Sbjct 3183 TTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq199332 Length=2940 Score = 141 bits (156), Expect = 1e-28 Identities = 280/411 (68%), Gaps = 15/411 (4%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| |||||| |||||||| || | || ||||| ||| Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||| || | | | || |||||||| ||| || ||||| Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || |||||||||||||| || | || ||| ||| | || || ||||| ||| Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCA---TAGTCTT--CTGTTCCTTT 173185 || || ||||| || || |||| ||| | | | || |||| |||| || | Sbjct 2357 ACCGCGGCAGTTTCTACTCCTG-----CTAATAGTTTACTTTACTCTTTGTTGTTACTAT 2303 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| || ||||||||||| || ||||||| ||| | || || || |||| | Sbjct 2302 GGGGTCCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGT 2243 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATA----GGTTTCATGCTCCGTCAGTTTGAG 173301 |||| || | || || | |||||||| ||| |||||||| |||| ||||| Sbjct 2242 TTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAA 2184 Query 173302 ATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCT 173352 | || || ||| | ||||||| || ||| |||||||||||||| Sbjct 2183 CTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCT 2133 >seq197706 Length=393 Score = 138 bits (152), Expect = 1e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || |||||||| || ||||| |||||||| || || || | ||||| ||| | || ||| Sbjct 153 GCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCT 212 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | | ||||| ||||| || ||||| ||||| || |||| | || || ||||| Sbjct 213 CTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGC 272 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||| ||||| || |||||||| ||| |||| ||||||||||| |||||||| ||| Sbjct 273 TTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGT 332 Query 172102 CCTTATCAG 172110 |||||| || Sbjct 333 CCTTATGAG 341 >seq198282 Length=4172 Score = 129 bits (142), Expect = 7e-25 Identities = 199/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 6 ACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 65 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 66 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 125 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||||| || || ||||| | || || ||||| || ||||| || || | ||||| ||| Sbjct 126 GGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGAA 185 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || |||||||||||||| || || || || | ||||| ||||| | || Sbjct 186 GATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTCGTGCT 245 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCC 173954 |||||| | || |||||| || ||||| ||| | |||| || Sbjct 246 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289 >seq195632 Length=12301 Score = 120 bits (132), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 157930 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 157989 ||| || | |||||||| |||||||||| |||||||| || ||||||||||| || Sbjct 2121 AACATTATGGAGAATCCGGGTTGGTACACCCAGTACACTCCTTACCAAGCTGAGATTTCG 2180 Query 157990 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTA 158049 ||||| | ||||| | | | |||||||| || | || ||||| ||||| || || Sbjct 2181 CAGGGTCGTTTGGAGTCCCTGCTTAATTACCAGACCATGATTACAGATCTCACTGGTCTC 2240 Query 158050 CCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || ||||||| || || ||||||||| |||||| || ||||| |||||| Sbjct 2241 CCCATGTCAAACGCGTCCTTACTAGATGAAGGAACTGCTGCGGCAGAGGCAATG 2294 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613 |||||||||| || |||||||| || | ||| | ||| ||||||||||||| Sbjct 6066 TTACATATCCTTCGACACATGGGGTTTACGAAGAAGGCATTGATGAGATATGTAAGATAA 6125 Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGT 159672 | ||||| ||||||||||| || || | ||||| || || | ||||||||||||||| Sbjct 6126 TACATGATAATGGTGGTCAAGTTTACATGGATGGGGCCAACATGAATGCACAGGTAGGT 6184 >seq182658 Length=6062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 |||||| ||||| |||||||| || | || || |||||||||||||||||||| || || Sbjct 5605 TGGTGCTGATGTTTGTCATCTCAATCTCCACAAAACATTCTGTATTCCACATGGTGGAGG 5664 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | |||||||||||||| Sbjct 5665 TGGTCCTGGCATGGGTCCTATTGGTGT 5691 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613 |||||||||| || |||||||| || | ||| | ||| | ||||||||||| Sbjct 4675 TTACATATCCTTCAACACATGGAGTTTACGAAGAAGGCATTGATGAAATATGTAAGATAA 4734 Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668 ||||||| ||||| ||||| || ||| | |||||||| || | ||||||||||| Sbjct 4735 TTCATGACAATGGGGGTCAAGTTTATATGGATGGTGCCAACATGAATGCACAGGT 4789 >seq198552 Length=7756 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 4120 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGCTGGTCTGGT 4179 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 | || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 4180 TTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACCACCTTT 4239 Query 173071 GTTACATCATGGTATACACATGGTAT 173096 || || ||||||||||| ||||| || Sbjct 4240 GTAACTTCATGGTATACTCATGGCAT 4265 >seq198484 Length=6561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 172663 AACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGG 172722 || |||||||| ||||||||||| || || ||| | | || | || ||| ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 172723 GGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACAC 172782 | || | ||||| | || ||||| ||||||||||||||||||||| | ||||| || Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 172783 AACTTCCCATTAGACCTTGC 172802 |||||||| ||||||| || Sbjct 6354 AACTTCCCTCTAGACCTAGC 6373 >seq198248 Length=3867 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 172588 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 172647 || |||||||| | || ||||| ||| || | ||||| || || | |||||| | || Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 172648 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 ||||| ||||| || || |||||||| ||||||||||| || || ||| Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586579579820080