Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq198569 255 9e-63 seq197127 145 1e-29 seq200167 141 1e-28 seq198258 111 2e-19 >seq198569 Length=8129 Score = 255 bits (282), Expect = 9e-63 Identities = 309/416 (74%), Gaps = 16/416 (4%) Strand=Plus/Plus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | || |||||| |||||||||| |||||| || || || | Sbjct 2793 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 2852 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | ||||| ||| || ||| | | |||||| | ||||| || ||| |||| Sbjct 2853 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTG 2912 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| ||||| || ||||||||||| || ||||||| |||| | || ||||||||||||| Sbjct 2913 ATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGC 2972 Query 215814 ACAACATTCTGATGCACCCA-TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCA 215872 |||| || || ||||||||| ||| | ||||||||||| |||||||| || | || || Sbjct 2973 ACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCT 3032 Query 215873 TTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAG 215932 | ||| ||| ||||| ||||| |||| || | ||||||||| || || || | Sbjct 3033 CTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAGGGAAACCACCCCG 3087 Query 215933 CAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTA 215992 | ||| ||| || |||| || || |||||||||||||| || || || ||| Sbjct 3088 C--TAAT----GAA----GGGTACAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTA 3137 Query 215993 GCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 ||||| || ||||| ||||| || | ||||||||||| || |||||||||||| Sbjct 3138 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 3193 >seq197127 Length=16832 Score = 145 bits (160), Expect = 1e-29 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 215710 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769 ||| || ||| | | |||||| | ||||| || ||| ||||||| ||||| || || Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772 Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829 ||||||||| || ||||||| |||| | || ||||||||||||||||| || || ||||| Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712 Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGT 215859 |||||| |||||||||||||| |||||||| Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq200167 Length=15642 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 215755 TGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814 || |||||| || ||||||||||| || ||||||| ||| || |||||||||||||| Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATT 215874 |||||| || ||||||||||| |||||||||||||| |||||||| || ||||| || | Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 215875 GTTCTCTGCAATGCACGGTTC 215895 |||| | | ||||| ||||| Sbjct 10706 GTTCAGTACTATGCATGGTTC 10686 >seq198258 Length=3934 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 215751 CTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTG 215810 ||| || ||||| | ||||| ||| | || ||||||| | || | || ||| |||||| Sbjct 3138 CTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTG 3197 Query 215811 AGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTT 215870 ||||||| || || | |||||||| |||||||||||||| |||||||| ||||| || | Sbjct 3198 AGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 3257 Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGT 215901 | | || ||| ||||| ||||| |||| Sbjct 3258 CTCTATTTAGTGCTATGCATGGTTCCTTTGT 3288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743217005355440