Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 255 9e-63
seq197127 145 1e-29
seq200167 141 1e-28
seq198258 111 2e-19
>seq198569
Length=8129
Score = 255 bits (282), Expect = 9e-63
Identities = 309/416 (74%), Gaps = 16/416 (4%)
Strand=Plus/Plus
Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693
||||||||||| || | | || |||||| |||||||||| |||||| || || || |
Sbjct 2793 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTC 2852
Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753
|||| | ||||| ||| || ||| | | |||||| | ||||| || ||| ||||
Sbjct 2853 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTG 2912
Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813
||| ||||| || ||||||||||| || ||||||| |||| | || |||||||||||||
Sbjct 2913 ATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGC 2972
Query 215814 ACAACATTCTGATGCACCCA-TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCA 215872
|||| || || ||||||||| ||| | ||||||||||| |||||||| || | || ||
Sbjct 2973 ACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCT 3032
Query 215873 TTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAG 215932
| ||| ||| ||||| ||||| |||| || | ||||||||| || || || |
Sbjct 3033 CTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAGGGAAACCACCCCG 3087
Query 215933 CAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTA 215992
| ||| ||| || |||| || || |||||||||||||| || || || |||
Sbjct 3088 C--TAAT----GAA----GGGTACAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTA 3137
Query 215993 GCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048
||||| || ||||| ||||| || | ||||||||||| || ||||||||||||
Sbjct 3138 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 3193
>seq197127
Length=16832
Score = 145 bits (160), Expect = 1e-29
Identities = 122/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 215710 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769
||| || ||| | | |||||| | ||||| || ||| ||||||| ||||| || ||
Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772
Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829
||||||||| || ||||||| |||| | || ||||||||||||||||| || || |||||
Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712
Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGT 215859
|||||| |||||||||||||| ||||||||
Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGGTGT 16682
>seq200167
Length=15642
Score = 141 bits (156), Expect = 1e-28
Identities = 116/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 215755 TGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814
|| |||||| || ||||||||||| || ||||||| ||| || ||||||||||||||
Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767
Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATT 215874
|||||| || ||||||||||| |||||||||||||| |||||||| || ||||| || |
Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707
Query 215875 GTTCTCTGCAATGCACGGTTC 215895
|||| | | ||||| |||||
Sbjct 10706 GTTCAGTACTATGCATGGTTC 10686
>seq198258
Length=3934
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 215751 CTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTG 215810
||| || ||||| | ||||| ||| | || ||||||| | || | || ||| ||||||
Sbjct 3138 CTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTG 3197
Query 215811 AGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTT 215870
||||||| || || | |||||||| |||||||||||||| |||||||| ||||| || |
Sbjct 3198 AGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 3257
Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGT 215901
| | || ||| ||||| ||||| ||||
Sbjct 3258 CTCTATTTAGTGCTATGCATGGTTCCTTTGT 3288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743217005355440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |