Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 248 1e-60
seq197127 138 1e-27
seq200167 113 5e-20
seq197706 113 5e-20
seq198484 82.4 9e-11
seq197886 82.4 9e-11
>seq198569
Length=8129
Score = 248 bits (274), Expect = 1e-60
Identities = 331/455 (73%), Gaps = 20/455 (4%)
Strand=Plus/Plus
Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076
|| |||||| | |||||||||| | |||||| |||||||| |||||||| |||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136
|||||||| ||||| || |||| || ||||| ||||| | ||||| | |||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196
||| ||| || || || ||||||||||| ||||| ||||| || ||||||||| |||||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCA-TTCCATATGGCAGGGGTTGCTGGTAT 170255
||||| || |||||||| || |||||||||||| ||| ||||| ||| || |||||| |
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019
Query 170256 GTTCGGAGGAGCACTCTTCTCA--GCAATGCACGGTTCACTTGTAACATCTTCTCTAATC 170313
|| ||| | || |||| ||| || ||||| ||||| | ||| | |||||||
Sbjct 3020 ATT-GGACG-GCTCTCTATTCAATGCTATGCATGGTTCCTTGGTAGC-----TTCTAATC 3072
Query 170314 AGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAA 170373
|| || || || | | | ||| || |||| ||| || ||||| || |||
Sbjct 3073 AGGGAAACCAC------CCCGCTAATGAA----GGGTACAGATTTGGTCAAGAGGAGGAA 3122
Query 170374 ACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGC 170433
|| || || ||||| || || ||||| || ||||| || | |||||||||||||||||
Sbjct 3123 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3182
Query 170434 TTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGC 170468
|| ||||| |||| | | || || ||||| ||
Sbjct 3183 TTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq197127
Length=16832
Score = 138 bits (152), Expect = 1e-27
Identities = 124/155 (80%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166
||||| ||||| | ||||| | ||||| ||| ||| || || || |||||||||||
Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771
Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226
||||| ||||| || ||||||||| |||||||||| || |||||||| || |||||||||
Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711
Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGG 170261
||||| || ||| ||| || ||||| |||||||
Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678
>seq200167
Length=15642
Score = 113 bits (124), Expect = 5e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 170152 GGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCAC 170211
|| ||||||||||| ||||| ||||| || ||||| ||| ||||||||| || ||||||
Sbjct 10825 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCAC 10766
Query 170212 AACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTC 170271
||||| |||||||||||||| || ||| ||| || |||||| | || || || | ||
Sbjct 10765 AACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTG 10706
Query 170272 TTCTCAGCAATGCACGGTTC 170291
||| | ||||| |||||
Sbjct 10705 TTCAGTACTATGCATGGTTC 10686
>seq197706
Length=393
Score = 113 bits (124), Expect = 5e-20
Identities = 208/305 (68%), Gaps = 9/305 (3%)
Strand=Plus/Plus
Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC-ATG- 169760
|||| ||||| || ||| | | || |||| |||| ||||| ||||||||||| | |
Sbjct 55 TAACTAGCACTAAAAACTGTCTTTACATTGGATGGTATGGTGTTTTGATGATCCCTACGG 114
Query 169761 -------TCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTG 169813
|||||| | ||| | | ||||| | || ||||| || ||||| || |
Sbjct 115 ACCCCACCCTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 174
Query 169814 TGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCA 169873
| || || ||||| || | |||||||| | || || | | ||||| ||||| || |
Sbjct 175 TCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTA 234
Query 169874 TCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGG 169933
|||| ||||| || |||| |||| || || || | ||||| || || || ||||
Sbjct 235 TCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGG 294
Query 169934 AAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCC 169993
|||| ||| | | ||||| ||||| || || || ||||||||| | || || | | |
Sbjct 295 AAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTAC 354
Query 169994 ACTTC 169998
|||||
Sbjct 355 ACTTC 359
>seq198484
Length=6561
Score = 82.4 bits (90), Expect = 9e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 170533 AATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGG 170592
||||| || || |||||||| || | || ||| | || ||| || ||| |||
Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293
Query 170593 GCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACAC 170652
|| || | ||||| | || ||||| ||||||||||| |||||||| |||||||| ||
Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353
Query 170653 AACTTCCCACTTGAC 170667
|||||||| || |||
Sbjct 6354 AACTTCCCTCTAGAC 6368
>seq197886
Length=1258
Score = 82.4 bits (90), Expect = 9e-11
Identities = 181/269 (67%), Gaps = 7/269 (3%)
Strand=Plus/Plus
Query 170405 TTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCC 170464
|||| || | ||||||||||||| || ||||| ||| || | | | || |||||||
Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391
Query 170465 TTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCAT 170524
| || | |||||| || | |||| ||| | | | |||||| || ||||
Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451
Query 170525 TTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATC-TGGTAAAGTAGTT 170583
| ||||| ||||| || || |||||||| || | || ||| ||| ||| ||| ||
Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGAT-AATCAAGGTCGTGTAATT 510
Query 170584 CCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGT-----AATGCATG 170638
|| ||||| || | ||||| || ||| | |||| | |||| || ||||
Sbjct 511 AAGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATG 570
Query 170639 AGCGTAATGCACACAACTTCCCACTTGAC 170667
| |||||||| || |||||||| || |||
Sbjct 571 AACGTAATGCTCATAACTTCCCTCTAGAC 599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581389401023200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |