Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq198569 248 1e-60 seq197127 138 1e-27 seq200167 113 5e-20 seq197706 113 5e-20 seq198484 82.4 9e-11 seq197886 82.4 9e-11 >seq198569 Length=8129 Score = 248 bits (274), Expect = 1e-60 Identities = 331/455 (73%), Gaps = 20/455 (4%) Strand=Plus/Plus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 || |||||| | |||||||||| | |||||| |||||||| |||||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| ||||| || |||| || ||||| ||||| | ||||| | ||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| ||| || || || ||||||||||| ||||| ||||| || ||||||||| ||||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCA-TTCCATATGGCAGGGGTTGCTGGTAT 170255 ||||| || |||||||| || |||||||||||| ||| ||||| ||| || |||||| | Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 170256 GTTCGGAGGAGCACTCTTCTCA--GCAATGCACGGTTCACTTGTAACATCTTCTCTAATC 170313 || ||| | || |||| ||| || ||||| ||||| | ||| | ||||||| Sbjct 3020 ATT-GGACG-GCTCTCTATTCAATGCTATGCATGGTTCCTTGGTAGC-----TTCTAATC 3072 Query 170314 AGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAA 170373 || || || || | | | ||| || |||| ||| || ||||| || ||| Sbjct 3073 AGGGAAACCAC------CCCGCTAATGAA----GGGTACAGATTTGGTCAAGAGGAGGAA 3122 Query 170374 ACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGC 170433 || || || ||||| || || ||||| || ||||| || | ||||||||||||||||| Sbjct 3123 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 3182 Query 170434 TTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGC 170468 || ||||| |||| | | || || ||||| || Sbjct 3183 TTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq197127 Length=16832 Score = 138 bits (152), Expect = 1e-27 Identities = 124/155 (80%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166 ||||| ||||| | ||||| | ||||| ||| ||| || || || ||||||||||| Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 ||||| ||||| || ||||||||| |||||||||| || |||||||| || ||||||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGG 170261 ||||| || ||| ||| || ||||| ||||||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678 >seq200167 Length=15642 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 170152 GGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCAC 170211 || ||||||||||| ||||| ||||| || ||||| ||| ||||||||| || |||||| Sbjct 10825 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCAC 10766 Query 170212 AACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTC 170271 ||||| |||||||||||||| || ||| ||| || |||||| | || || || | || Sbjct 10765 AACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTG 10706 Query 170272 TTCTCAGCAATGCACGGTTC 170291 ||| | ||||| ||||| Sbjct 10705 TTCAGTACTATGCATGGTTC 10686 >seq197706 Length=393 Score = 113 bits (124), Expect = 5e-20 Identities = 208/305 (68%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC-ATG- 169760 |||| ||||| || ||| | | || |||| |||| ||||| ||||||||||| | | Sbjct 55 TAACTAGCACTAAAAACTGTCTTTACATTGGATGGTATGGTGTTTTGATGATCCCTACGG 114 Query 169761 -------TCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTG 169813 |||||| | ||| | | ||||| | || ||||| || ||||| || | Sbjct 115 ACCCCACCCTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 174 Query 169814 TGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCA 169873 | || || ||||| || | |||||||| | || || | | ||||| ||||| || | Sbjct 175 TCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTA 234 Query 169874 TCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGG 169933 |||| ||||| || |||| |||| || || || | ||||| || || || |||| Sbjct 235 TCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGG 294 Query 169934 AAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCC 169993 |||| ||| | | ||||| ||||| || || || ||||||||| | || || | | | Sbjct 295 AAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTAC 354 Query 169994 ACTTC 169998 ||||| Sbjct 355 ACTTC 359 >seq198484 Length=6561 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 170533 AATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGG 170592 ||||| || || |||||||| || | || ||| | || ||| || ||| ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 170593 GCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACAC 170652 || || | ||||| | || ||||| ||||||||||| |||||||| |||||||| || Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 170653 AACTTCCCACTTGAC 170667 |||||||| || ||| Sbjct 6354 AACTTCCCTCTAGAC 6368 >seq197886 Length=1258 Score = 82.4 bits (90), Expect = 9e-11 Identities = 181/269 (67%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 170405 TTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCC 170464 |||| || | ||||||||||||| || ||||| ||| || | | | || ||||||| Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 170465 TTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCAT 170524 | || | |||||| || | |||| ||| | | | |||||| || |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 170525 TTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATC-TGGTAAAGTAGTT 170583 | ||||| ||||| || || |||||||| || | || ||| ||| ||| ||| || Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGAT-AATCAAGGTCGTGTAATT 510 Query 170584 CCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGT-----AATGCATG 170638 || ||||| || | ||||| || ||| | |||| | |||| || |||| Sbjct 511 AAGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATG 570 Query 170639 AGCGTAATGCACACAACTTCCCACTTGAC 170667 | |||||||| || |||||||| || ||| Sbjct 571 AACGTAATGCTCATAACTTCCCTCTAGAC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581389401023200