Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq181690 118 7e-22 seq160375 100 2e-16 seq176217 96.9 2e-15 seq116321 93.3 3e-14 seq194317 91.5 1e-13 seq155647 86.0 4e-12 >seq181690 Length=5866 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| || | || ||||||||||| || ||| || ||||| || || |||| | Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| | || || ||||||||||| ||||| || || | |||||||||| | || Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||| || |||||| || ||| | || | || ||| || Sbjct 3083 ATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACT 3142 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||||||||| || || ||||| || |||||||| || |||||| Sbjct 3143 TCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3190 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||| || || ||||||||||| | ||| | || | || ||| Sbjct 2525 ACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCGAGGGTACGGCCGTCCTCC 2584 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || | || ||||| ||| |||| | ||||| ||||| | Sbjct 2585 AGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGAATACCCTCTTTGTCTTGA 2644 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| | ||| || || | || ||||| || Sbjct 2645 ATCTTTGACTTCACGTTATCAATAGTGTCAGAGTTCTCCACTTCCAAAGTGATGGTCTTC 2704 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||||| || |||||||| Sbjct 2705 CCTGTCAATGTCTTCACGAAAATCTGCAT 2733 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || || || || || || || | ||| | | |||| || Sbjct 3436 AACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTC 3495 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||| || ||||| || || | |||||||||| | || | ||| ||||| || Sbjct 3496 CAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTG 3555 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || |||| || ||| | || || || | ||| |||| Sbjct 3556 GATCTTTGCCTTGAC--AT--TATCAATTGTATCAGAGCTTTCCACCTCAAGGGTGATGG 3611 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| || ||||||||||||||||| Sbjct 3612 TCTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 3645 >seq160375 Length=3367 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||||||| | ||| ||| ||||| |||||||| || | Sbjct 470 CCACCCCTCAGACGGAGCACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 529 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || ||||| |||||||| || || || | ||||| || | || Sbjct 530 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 589 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| ||||| |||||| | || | || | |||||| Sbjct 590 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 649 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| |||||||| || || | ||||| ||||||||||||||| Sbjct 650 TCCAAGGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAGATCTGCATA 697 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||||||| | ||| ||| ||||||||||| ||||| | Sbjct 698 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 757 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || || || |||||||| || || || | |||||||| | || Sbjct 758 AAGGTACGGCCATCCTCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 817 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| ||||| |||||| | || | || | |||||| Sbjct 818 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 877 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || | |||||||||||||||||||| Sbjct 878 TCCAAAGTGATTGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 924 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| | | | | || |||| || Sbjct 944 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCCTCG 1003 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || | ||||||||| | || | ||||||||||| | Sbjct 1004 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 1063 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||| || ||| | || | || | ||| || || | ||| ||||| || Sbjct 1064 ATTTTCGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTG 1123 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| ||||||||||||||| Sbjct 1124 CCGGTCAAGGTCTTAACAAAGATCTGCATA 1153 >seq176217 Length=4970 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/215 (72%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCAT 34830 |||||||||| || ||| ||||||||||| ||||| | |||| | || |||| | Sbjct 2082 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTCCTC--CCATCCT 2139 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 ||| ||||| || ||||| || | | ||||||||| |||| | |||||||||||| Sbjct 2140 CCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGCGGGATCCCCTCCTTGTCTT 2199 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATG 34946 |||||| || || || ||||||| | ||| |||||| || | |||||| Sbjct 2200 GGATCTTCGCCTTCAC--AT--TATCGATGGTGTCCGAACTCTCAACCTCCAAGGTTATA 2255 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || | ||||| || ||||| ||||| Sbjct 2256 GTCTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 2290 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || || || ||||| || || | |||| | || |||| || Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || || | |||||||||| | || | || |||||||| Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | ||| | || || || | || ||||||||| Sbjct 2886 ATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTT 2945 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| ||||||||||| Sbjct 2946 CCTGTCAGGGTTTTCACGAAGATCTGCAT 2974 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||| || || ||||||||||| | |||| | || | || ||| Sbjct 1854 ACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCAAGGGTGCGGCCGTCCTCC 1913 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || | | ||||| || | || | ||||||||| || Sbjct 1914 AGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTATCTTGG 1973 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATT-CACCGG---CCTCAACATCGACGGTTATGGT 34948 |||||| ||||| || |||| ||| | ||| |||||| || | |||||| || Sbjct 1974 ATCTTCGCCTTGAC--AT--TATCAATTGTATCGGAACTCTCAACCTCCAAGGTTATAGT 2029 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | ||||||||||| |||||||| Sbjct 2030 CTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062 >seq116321 Length=1411 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | ||| | || |||| || |||||||||||||| || Sbjct 826 TCCTTCTGGATATTGTAGTCGGCGAGGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAG 767 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | |||||| ||||| |||||| || || Sbjct 766 ATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCTTGAATCTTAGCCTTCAC---- 711 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| || ||| || || | ||| || || ||||| ||||| || || Sbjct 710 GTTATCGATGGTGTCTGAACTCTCGACCTCCAAGGTAATAGTCTTTCCGGTGAGGGTTTT 651 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 650 CACAAAGATCTGCAT 636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||||||| | ||| ||| ||||| ||||| || || | Sbjct 1318 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 1259 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| || ||||| |||||||| || || || | ||||| || | || Sbjct 1258 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 1199 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||||||| ||||| |||||| | || | || | ||| || Sbjct 1198 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACC 1139 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| ||||| || || ||||| || |||||||||||| Sbjct 1138 TCCAAGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCATA 1091 >seq194317 Length=10706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | || ||| | | || |||||||| || ||||| || Sbjct 1341 TTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAA 1400 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | || || ||||| ||||| |||||| | Sbjct 1401 GATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGAC--A 1458 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| ||| || ||||| || | |||||||||||| || || | || | Sbjct 1459 T--TGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTT 1516 Query 34966 TCACAAAGATCTGCATATTCG 34986 | || ||||||||||| |||| Sbjct 1517 TGACGAAGATCTGCATCTTCG 1537 >seq155647 Length=3035 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| | ||| | || | || || Sbjct 2218 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCGTCCTCG 2159 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || || || || || ||||||||||| | || | || |||||||| Sbjct 2158 AGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 2099 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || || ||||| |||| |||||||| Sbjct 2098 ATCTTAGCCTTGAC--AT--TGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATGGT 2043 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||| || || || || ||||||||||| || Sbjct 2042 CTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323841502436184