Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq181690 118 7e-22
seq160375 100 2e-16
seq176217 96.9 2e-15
seq116321 93.3 3e-14
seq194317 91.5 1e-13
seq155647 86.0 4e-12
>seq181690
Length=5866
Score = 118 bits (130), Expect = 7e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||| || | || ||||||||||| || ||| || ||||| || || |||| |
Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | ||| | || || ||||||||||| ||||| || || | |||||||||| | ||
Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||||||| || |||||| || ||| | || | || ||| ||
Sbjct 3083 ATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACT 3142
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| | ||||||||| || || ||||| || |||||||| || ||||||
Sbjct 3143 TCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3190
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| |||| ||| ||| || || ||||||||||| | ||| | || | || |||
Sbjct 2525 ACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCGAGGGTACGGCCGTCCTCC 2584
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||| ||||| || | || ||||| ||| |||| | ||||| ||||| |
Sbjct 2585 AGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGAATACCCTCTTTGTCTTGA 2644
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| || ||| | || | ||| | ||| || || | || ||||| ||
Sbjct 2645 ATCTTTGACTTCACGTTATCAATAGTGTCAGAGTTCTCCACTTCCAAAGTGATGGTCTTC 2704
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || | |||||||| || ||||||||
Sbjct 2705 CCTGTCAATGTCTTCACGAAAATCTGCAT 2733
Score = 82.4 bits (90), Expect = 5e-11
Identities = 148/214 (69%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| || || || || || || || || | ||| | | |||| ||
Sbjct 3436 AACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTC 3495
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| |||||| || ||||| || || | |||||||||| | || | ||| ||||| ||
Sbjct 3496 CAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATCTTG 3555
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||||| ||||| || |||| || ||| | || || || | ||| ||||
Sbjct 3556 GATCTTTGCCTTGAC--AT--TATCAATTGTATCAGAGCTTTCCACCTCAAGGGTGATGG 3611
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || ||||| || |||||||||||||||||
Sbjct 3612 TCTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 3645
>seq160375
Length=3367
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | | |||||||| | ||| ||| ||||| |||||||| || |
Sbjct 470 CCACCCCTCAGACGGAGCACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 529
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | | || |||| || ||||| |||||||| || || || | ||||| || | ||
Sbjct 530 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 589
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| |||||||||||| ||||| |||||| | || | || | ||||||
Sbjct 590 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 649
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| | ||| |||||||| || || | ||||| |||||||||||||||
Sbjct 650 TCCAAGGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAGATCTGCATA 697
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | | |||||||| | ||| ||| ||||||||||| ||||| |
Sbjct 698 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 757
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | | || |||| || || || |||||||| || || || | |||||||| | ||
Sbjct 758 AAGGTACGGCCATCCTCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 817
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| |||||||||||| ||||| |||||| | || | || | ||||||
Sbjct 818 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 877
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | || || || || || || | ||||||||||||||||||||
Sbjct 878 TCCAAAGTGATTGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 924
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||| ||||| ||||| ||||| | | | | || |||| ||
Sbjct 944 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCCTCG 1003
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || || | ||||||||| | || | ||||||||||| |
Sbjct 1004 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGA 1063
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| ||| || ||| | || | || | ||| || || | ||| ||||| ||
Sbjct 1064 ATTTTCGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTG 1123
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || | ||||| |||||||||||||||
Sbjct 1124 CCGGTCAAGGTCTTAACAAAGATCTGCATA 1153
>seq176217
Length=4970
Score = 96.9 bits (106), Expect = 2e-15
Identities = 154/215 (72%), Gaps = 12/215 (6%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCAT 34830
|||||||||| || ||| ||||||||||| ||||| | |||| | || |||| |
Sbjct 2082 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTCCTC--CCATCCT 2139
Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890
||| ||||| || ||||| || | | ||||||||| |||| | ||||||||||||
Sbjct 2140 CCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGCGGGATCCCCTCCTTGTCTT 2199
Query 34891 TAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATG 34946
|||||| || || || ||||||| | ||| |||||| || | ||||||
Sbjct 2200 GGATCTTCGCCTTCAC--AT--TATCGATGGTGTCCGAACTCTCAACCTCCAAGGTTATA 2255
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || | ||||| || ||||| |||||
Sbjct 2256 GTCTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 2290
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || || || ||||| || || | |||| | || |||| ||
Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || |||||||| || || | |||||||||| | || | || ||||||||
Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||||| | || | ||| | || || || | || |||||||||
Sbjct 2886 ATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTT 2945
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||||| |||||||||||
Sbjct 2946 CCTGTCAGGGTTTTCACGAAGATCTGCAT 2974
Score = 89.7 bits (98), Expect = 3e-13
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| |||| ||| ||| || || ||||||||||| | |||| | || | || |||
Sbjct 1854 ACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCAAGGGTGCGGCCGTCCTCC 1913
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || | | ||||| || | || | ||||||||| ||
Sbjct 1914 AGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTATCTTGG 1973
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATT-CACCGG---CCTCAACATCGACGGTTATGGT 34948
|||||| ||||| || |||| ||| | ||| |||||| || | |||||| ||
Sbjct 1974 ATCTTCGCCTTGAC--AT--TATCAATTGTATCGGAACTCTCAACCTCCAAGGTTATAGT 2029
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || | ||||||||||| ||||||||
Sbjct 2030 CTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062
>seq116321
Length=1411
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||| | ||| | || |||| || |||||||||||||| ||
Sbjct 826 TCCTTCTGGATATTGTAGTCGGCGAGGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAG 767
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | ||||||||| | || | |||||| ||||| |||||| || ||
Sbjct 766 ATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCTTGAATCTTAGCCTTCAC---- 711
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||||| || ||| || || | ||| || || ||||| ||||| || ||
Sbjct 710 GTTATCGATGGTGTCTGAACTCTCGACCTCCAAGGTAATAGTCTTTCCGGTGAGGGTTTT 651
Query 34967 CACAAAGATCTGCAT 34981
|||||||||||||||
Sbjct 650 CACAAAGATCTGCAT 636
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | | |||||||| | ||| ||| ||||| ||||| || || |
Sbjct 1318 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 1259
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | | || |||| || ||||| |||||||| || || || | ||||| || | ||
Sbjct 1258 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 1199
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| |||||||||||| ||||| |||||| | || | || | ||| ||
Sbjct 1198 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACC 1139
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| | ||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct 1138 TCCAAGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCATA 1091
>seq194317
Length=10706
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/201 (71%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| ||||| | || ||| | | || |||||||| || ||||| ||
Sbjct 1341 TTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAA 1400
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || || |||||| | || | || || ||||| ||||| |||||| |
Sbjct 1401 GATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGAC--A 1458
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| ||| || ||||| || | |||||||||||| || || | || |
Sbjct 1459 T--TGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTT 1516
Query 34966 TCACAAAGATCTGCATATTCG 34986
| || ||||||||||| ||||
Sbjct 1517 TGACGAAGATCTGCATCTTCG 1537
>seq155647
Length=3035
Score = 86.0 bits (94), Expect = 4e-12
Identities = 150/216 (69%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||||| || || ||||| ||||| ||||| | ||| | || | || ||
Sbjct 2218 ACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCGTCCTCG 2159
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || || || || || ||||||||||| | || | || ||||||||
Sbjct 2158 AGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 2099
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || || ||||| |||| ||||||||
Sbjct 2098 ATCTTAGCCTTGAC--AT--TGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATGGT 2043
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| ||||| || || || || ||||||||||| ||
Sbjct 2042 CTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 2007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323841502436184
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