Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq198569 286 4e-72 seq197706 140 4e-28 seq197127 123 3e-23 seq200167 120 3e-22 seq198484 105 8e-18 seq198258 105 8e-18 seq197639 98.7 1e-15 >seq198569 Length=8129 Score = 286 bits (316), Expect = 4e-72 Identities = 352/480 (73%), Gaps = 16/480 (3%) Strand=Plus/Minus Query 84182 GAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAA 84241 |||||| || | ||||||| |||||||| |||||| |||||||| | || || || Sbjct 3212 GAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAA 3153 Query 84242 GTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATA 84301 || || |||||||| |||||||||||||||||||| |||||||| || |||| || | Sbjct 3152 ATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTACCCTTC 3093 Query 84302 GTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATG 84361 || | | | || ||||| | ||||||| || || | |||||||| Sbjct 3092 ATTA-GCGGG---------GTGGTTTCCCTGATTAGA-----AGCTACCAAGGAACCATG 3048 Query 84362 CATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGT-GAAAGGGAT 84420 ||| ||| |||||||| || | ||||||||||| || || ||||| | |||| || | Sbjct 3047 CATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAAATGGGT 2988 Query 84421 GCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATAC 84480 |||||||||| || || || |||||||| || | |||| ||||||| || || ||||| | Sbjct 2987 GCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAGAGATTC 2928 Query 84481 CAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAG 84540 | || ||||| |||||||| ||| ||||| || | ||||| | | ||| ||||||| Sbjct 2927 CTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAACAGCAG 2868 Query 84541 ATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGAT 84600 || |||||||| ||||| || || |||||| ||||| || |||||||| | ||| Sbjct 2867 TAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAAACGGA 2808 Query 84601 ATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAA 84660 | ||||||||| ||||||||||| ||| | | |||||| | |||||| | |||| Sbjct 2807 AACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 2748 >seq197706 Length=393 Score = 140 bits (154), Expect = 4e-28 Identities = 198/276 (72%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 84615 TCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGT 84674 ||||||||||| ||| | | |||||| | |||||| | |||| || | |||||| Sbjct 391 TCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 332 Query 84675 CCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGA 84734 || ||||| |||| |||||| || | ||| |||||||| || || || || || | Sbjct 331 CCGCCATTGTATAACCATTCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCAAG 272 Query 84735 CCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGA 84794 || ||||| ||| | |||| | |||||| || || || ||||| || || | ||| Sbjct 271 CCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTAGA 212 Query 84795 GAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCA 84854 || |||| || || ||||| ||||| |||||||| ||||| || ||| ||| ||| || Sbjct 211 GACCCAGAAACAGGTTCACGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGGCG 152 Query 84855 ATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGG 84889 || || || ||||| ||| |||| | ||| || || Sbjct 151 ATAATAAATACAGA-AGTTGCAGTTAATAGGGTGGG 117 >seq197127 Length=16832 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449 |||||||| || || ||||||||||| || ||||||||||| || || || |||||||| Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCT 84509 || | |||| ||||||| || || ||||| || || ||||| |||||||| ||| ||| Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 84510 TGCCCGAAAGGATACACAAGGAATACAGCAG 84540 || || | ||||| | | ||| ||||||| Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGCAG 16832 >seq200167 Length=15642 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 ||||||||||| | | ||| || | ||||| ||||||||||| || || ||||||||| Sbjct 10686 GAACCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGA 10745 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473 || || |||||||||||||| || || |||||||| || ||| ||||||| || || Sbjct 10746 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCA 10805 Query 84474 GAGATACCAAGTGGCATGCCA 84494 ||||| || || ||||| ||| Sbjct 10806 GAGATTCCTAGAGGCATACCA 10826 >seq198484 Length=6561 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 83972 CGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCC 84031 ||| || || | ||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 6374 CGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 6315 Query 84032 GGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACT 84091 ||||| |||| | ||||||||||||||| | |||||| ||| ||||| || | | Sbjct 6314 AGCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGA 6255 Query 84092 CTGATTGAAGTTAAATCCATT 84112 || ||||| || || ||||| Sbjct 6254 TTGGTTGAAATTGAAACCATT 6234 >seq198258 Length=3934 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 84348 ACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAAC 84407 |||| ||||||||||| ||| ||||||| || |||||||||||||| || || ||| Sbjct 3288 ACAAAGGAACCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAAC 3229 Query 84408 ATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAAC 84467 |||||||| || || | |||||| || || || |||| ||| || | || | ||||||| Sbjct 3228 ATGTGAAATGGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAA 3169 Query 84468 GTTCCTGAGATACCAAGTGGCATGCCATCAG 84498 || | || || || | ||||| ||| ||| Sbjct 3168 GTACTAGATATTCCCATAGGCATCCCACCAG 3138 >seq197639 Length=228 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 83972 CGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCC 84031 ||| || || | ||||||||||| || |||||||| ||||| |||||||||||||| Sbjct 109 CGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 168 Query 84032 GGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGAC 84085 ||||| |||| | ||||||||||||||| | |||||| ||| ||||| || Sbjct 169 AGCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAAC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569843966393240