Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 286 4e-72
seq197706 140 4e-28
seq197127 123 3e-23
seq200167 120 3e-22
seq198484 105 8e-18
seq198258 105 8e-18
seq197639 98.7 1e-15
>seq198569
Length=8129
Score = 286 bits (316), Expect = 4e-72
Identities = 352/480 (73%), Gaps = 16/480 (3%)
Strand=Plus/Minus
Query 84182 GAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAA 84241
|||||| || | ||||||| |||||||| |||||| |||||||| | || || ||
Sbjct 3212 GAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAA 3153
Query 84242 GTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATA 84301
|| || |||||||| |||||||||||||||||||| |||||||| || |||| || |
Sbjct 3152 ATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTACCCTTC 3093
Query 84302 GTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATG 84361
|| | | | || ||||| | ||||||| || || | ||||||||
Sbjct 3092 ATTA-GCGGG---------GTGGTTTCCCTGATTAGA-----AGCTACCAAGGAACCATG 3048
Query 84362 CATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGT-GAAAGGGAT 84420
||| ||| |||||||| || | ||||||||||| || || ||||| | |||| || |
Sbjct 3047 CATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAAATGGGT 2988
Query 84421 GCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATAC 84480
|||||||||| || || || |||||||| || | |||| ||||||| || || ||||| |
Sbjct 2987 GCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAGAGATTC 2928
Query 84481 CAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAG 84540
| || ||||| |||||||| ||| ||||| || | ||||| | | ||| |||||||
Sbjct 2927 CTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAACAGCAG 2868
Query 84541 ATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGAT 84600
|| |||||||| ||||| || || |||||| ||||| || |||||||| | |||
Sbjct 2867 TAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAAACGGA 2808
Query 84601 ATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAA 84660
| ||||||||| ||||||||||| ||| | | |||||| | |||||| | ||||
Sbjct 2807 AACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 2748
>seq197706
Length=393
Score = 140 bits (154), Expect = 4e-28
Identities = 198/276 (72%), Gaps = 2/276 (1%)
Strand=Plus/Minus
Query 84615 TCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGT 84674
||||||||||| ||| | | |||||| | |||||| | |||| || | ||||||
Sbjct 391 TCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGA 332
Query 84675 CCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGA 84734
|| ||||| |||| |||||| || | ||| |||||||| || || || || || |
Sbjct 331 CCGCCATTGTATAACCATTCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCAAG 272
Query 84735 CCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGA 84794
|| ||||| ||| | |||| | |||||| || || || ||||| || || | |||
Sbjct 271 CCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTAGA 212
Query 84795 GAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCA 84854
|| |||| || || ||||| ||||| |||||||| ||||| || ||| ||| ||| ||
Sbjct 211 GACCCAGAAACAGGTTCACGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGGCG 152
Query 84855 ATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGG 84889
|| || || ||||| ||| |||| | ||| || ||
Sbjct 151 ATAATAAATACAGA-AGTTGCAGTTAATAGGGTGGG 117
>seq197127
Length=16832
Score = 123 bits (136), Expect = 3e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449
|||||||| || || ||||||||||| || ||||||||||| || || || ||||||||
Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741
Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCT 84509
|| | |||| ||||||| || || ||||| || || ||||| |||||||| ||| |||
Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801
Query 84510 TGCCCGAAAGGATACACAAGGAATACAGCAG 84540
|| || | ||||| | | ||| |||||||
Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGCAG 16832
>seq200167
Length=15642
Score = 120 bits (132), Expect = 3e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413
||||||||||| | | ||| || | ||||| ||||||||||| || || |||||||||
Sbjct 10686 GAACCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGA 10745
Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473
|| || |||||||||||||| || || |||||||| || ||| ||||||| || ||
Sbjct 10746 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCA 10805
Query 84474 GAGATACCAAGTGGCATGCCA 84494
||||| || || ||||| |||
Sbjct 10806 GAGATTCCTAGAGGCATACCA 10826
>seq198484
Length=6561
Score = 105 bits (116), Expect = 8e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 83972 CGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCC 84031
||| || || | ||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 6374 CGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 6315
Query 84032 GGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACT 84091
||||| |||| | ||||||||||||||| | |||||| ||| ||||| || | |
Sbjct 6314 AGCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGA 6255
Query 84092 CTGATTGAAGTTAAATCCATT 84112
|| ||||| || || |||||
Sbjct 6254 TTGGTTGAAATTGAAACCATT 6234
>seq198258
Length=3934
Score = 105 bits (116), Expect = 8e-18
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 84348 ACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAAC 84407
|||| ||||||||||| ||| ||||||| || |||||||||||||| || || |||
Sbjct 3288 ACAAAGGAACCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAAC 3229
Query 84408 ATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAAC 84467
|||||||| || || | |||||| || || || |||| ||| || | || | |||||||
Sbjct 3228 ATGTGAAATGGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAA 3169
Query 84468 GTTCCTGAGATACCAAGTGGCATGCCATCAG 84498
|| | || || || | ||||| ||| |||
Sbjct 3168 GTACTAGATATTCCCATAGGCATCCCACCAG 3138
>seq197639
Length=228
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 83972 CGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCC 84031
||| || || | ||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 109 CGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 168
Query 84032 GGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGAC 84085
||||| |||| | ||||||||||||||| | |||||| ||| ||||| ||
Sbjct 169 AGCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAAC 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569843966393240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |