Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq181835 98.7 1e-15 >seq181835 Length=5898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| ||||| || | ||| | |||||| | ||| |||| | || ||| || |||||||| Sbjct 3466 ACCCCCTTGGTCAACATAGCGGGCAGTGTCATTAAAAACACGTAGCATGGGAACAATACC 3407 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||||| || || |||| | ||||||| || || Sbjct 3406 ATTGGATGTCCCATTTGTTCCACGGATATAGCTGCCTGTAGCACGTATATTATGAACAGA 3347 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || || ||| |||||| || | || ||||| || Sbjct 3346 GACACCAATTCCTCCCGCTGACTTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATAT 3287 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 |||||| |||||||||||| |||| Sbjct 3286 TCCTTCAATACTATCATCTTTCAT 3263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560702101648920