Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq198569 212 2e-50 seq197127 131 5e-26 seq197706 127 6e-25 seq200167 109 2e-19 seq198484 98.7 3e-16 seq198248 80.6 8e-11 seq197886 80.6 8e-11 seq197639 80.6 8e-11 >seq198569 Length=8129 Score = 212 bits (234), Expect = 2e-50 Identities = 334/477 (70%), Gaps = 16/477 (3%) Strand=Plus/Plus Query 26105 CACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTA 26164 ||||||||| | || ||||| ||| || | |||||||||| || | | | Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815 Query 26165 GGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTG 26224 || ||| |||| ||||| |||||||||| |||| || | | || ||| || || Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875 Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284 ||||| | ||||| | || ||||| |||||| |||||| |||||||| || |||||| Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935 Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA-TT 26343 |||||||| ||||| ||| |||||||||| || || || ||||| || ||||||||| || Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995 Query 26344 CCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAG 26403 | ||||| ||||| ||||| || || | || |||| ||| ||||||||| || Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055 Query 26404 TTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTA 26463 ||||| ||| || || ||||| || | | | ||| | || || Sbjct 3056 CTTGGTAGCTT-----CTAATCAGGGAAACCAC---------CCCGC-TAATGAAGGGTA 3100 Query 26464 TAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAG 26523 | ||||| ||||| || || || ||||||||||| ||||| || || || ||||| | Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160 Query 26524 ATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGC 26580 ||| || || || ||||| ||||| || ||| |||||| | ||||| || || || Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq197127 Length=16832 Score = 131 bits (144), Expect = 5e-26 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | ||||| | || ||||| |||||| |||||| |||||||| || Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||| ||| |||||||||| || || || ||||| || |||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTT 26368 ||||| || ||| ||||| ||||| ||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGGTGTT 16681 >seq197706 Length=393 Score = 127 bits (140), Expect = 6e-25 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| || || || || || ||||| ||||| || ||||| || ||| Sbjct 144 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTT 203 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 || || || || | || || |||||||| || ||||| || | | || | ||| Sbjct 204 TCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 263 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATAC 26074 || || || | || ||||||||||| |||||||||| | | || || ||| ||||| Sbjct 264 GCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATAC 323 Query 26075 AATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGC 26124 |||||||| || ||| | || ||| | | ||||||||| | || ||||| Sbjct 324 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 373 >seq200167 Length=15642 Score = 109 bits (120), Expect = 2e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 26263 TGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACA 26322 ||| |||||||| || |||||||||||||| ||||| ||| ||||||||| || || || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 26323 TAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCT 26382 || || || ||||||||||| || ||| ||||| ||||| || || ||||| | || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 26383 TTTCGCTGCTATGCACGG 26400 ||| | ||||||| || Sbjct 10706 GTTCAGTACTATGCATGG 10689 >seq198484 Length=6561 Score = 98.7 bits (108), Expect = 3e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 26643 TAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACAT 26702 |||||||||| || || ||||| || ||||| ||| | | || |||| ||| | Sbjct 6232 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCT 6291 Query 26703 GGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTC 26762 |||| ||| | | ||||| |||||||| || | ||||||||||| || |||||||||| Sbjct 6292 GGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 6351 Query 26763 ATAACTTTCCACTTGACTTAGC 26784 ||||||| || || ||| |||| Sbjct 6352 ATAACTTCCCTCTAGACCTAGC 6373 >seq198248 Length=3867 Score = 80.6 bits (88), Expect = 8e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 26569 TTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCAC 26628 ||| || || ||| ||||||| || || || || ||| | || || | |||||| |||| Sbjct 392 TTTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCAC 333 Query 26629 AATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 ||||| || || ||||||||||| || || ||||| || ||||| ||| Sbjct 332 TATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 284 >seq197886 Length=1258 Score = 80.6 bits (88), Expect = 8e-11 Identities = 181/272 (67%), Gaps = 5/272 (2%) Strand=Plus/Plus Query 26517 TTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTC 26576 |||| |||| || || || |||| | ||||||||| | || | | |||||||| | Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 26577 TTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCAT 26636 | || |||||| || | || || | | | | | | ||||| || |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 26637 TTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATAC 26696 | |||||||||||||| || || ||||| || ||||| ||| | | || |||| Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511 Query 26697 CTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGT-----TATGCACGA 26751 || ||||||||| | | |||| |||||| | || |||| ||| || || Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGA 571 Query 26752 GCGTAATGCTCATAACTTTCCACTTGACTTAG 26783 ||||||||||||||||| || || ||| ||| Sbjct 572 ACGTAATGCTCATAACTTCCCTCTAGACCTAG 603 >seq197639 Length=228 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 26698 TACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 ||| ||||| ||| | | ||||| |||||||| || | ||||||||||| || ||||| Sbjct 196 TACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 137 Query 26758 TGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||||||| || || ||| |||| Sbjct 136 TGCTCATAACTTCCCTCTAGACCTAGC 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146377571097672