Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 237 5e-58
seq197706 131 5e-26
seq197127 127 6e-25
seq200167 96.9 1e-15
seq198484 86.0 2e-12
seq198258 86.0 2e-12
seq197639 86.0 2e-12
>seq198569
Length=8129
Score = 237 bits (262), Expect = 5e-58
Identities = 326/450 (72%), Gaps = 18/450 (4%)
Strand=Plus/Minus
Query 36177 GCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 36236
|| ||||| ||||||||| || || || || |||||||| |||||||| | ||
Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158
Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296
||||| || |||||||| || ||||| ||||| || || || ||||| || ||| | ||
Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098
Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG-TAACAAGACT 36355
|| ||| ||| ||| || ||||| | || || ||| || ||||
Sbjct 3097 CC----TTC----ATT--AGCGGGGTGGTTTCCCTGATTAG-----AAGCTACCAAGGAA 3053
Query 36356 TCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAA 36415
|| ||||||||| ||||| || || | ||||| || || ||||| | ||||| |||
Sbjct 3052 -CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAA 2994
Query 36416 C-GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTG 36474
|| ||||||||||||||||| || ||||| || || | ||| || |||||||| || |
Sbjct 2993 ATGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAG 2934
Query 36475 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 36534
| || || |||||||| |||||||| ||||| ||||| |||| || |||| ||||| |
Sbjct 2933 AGATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAA 2874
Query 36535 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTA 36594
||||| || ||||||||||| |||||||| || ||| ||||| || | |||||| |
Sbjct 2873 CAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCA 2814
Query 36595 GTCTATAACTAAGTTCCCATTGTCGTCCCA 36624
| ||||||||||||| | || ||||
Sbjct 2813 AACGGAAACTAAGTTCCCACTCACGACCCA 2784
>seq197706
Length=393
Score = 131 bits (144), Expect = 5e-26
Identities = 216/313 (69%), Gaps = 9/313 (3%)
Strand=Plus/Minus
Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707
||||| | ||||| || | ||| || || || || |||||||| || || | || ||||
Sbjct 358 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCA 299
Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767
|||||||| || ||||| ||||| | || || || || | || | || || ||
Sbjct 298 GCTTCCCATATCGGGTAAAAGTGCAAGCCTATAGCTGCAGAAGTAGGAATAATGGCACCT 239
Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827
||||| || ||||| ||||| |||| | || || ||||| |||||||||||||| |||
Sbjct 238 GAGATAATATTGTTCCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATA 179
Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAG---- 36883
|| || ||||| ||||||| || || || | |||| | | ||| ||||| ||
Sbjct 178 TCGACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAGGGTG 119
Query 36884 -----TGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 36938
| ||||||||| | || ||| |||| || | || || | ||| || || ||
Sbjct 118 GGGTCCGTAGGGATCATCAAAACACCATACCATCCAATGTAAAGACAGTTTTTAGTGCTA 59
Query 36939 GTAACCCAGTCAC 36951
|| | |||| ||
Sbjct 58 GTTATTCAGTTAC 46
>seq197127
Length=16832
Score = 127 bits (140), Expect = 6e-25
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 36390 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 36449
|| || || ||||| | ||| || || || ||||||||||||||||| || ||||| ||
Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741
Query 36450 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 36509
|| | ||| || |||||||| || || || || |||||||| |||||||| ||||| |||
Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801
Query 36510 TGTCCAAAAGGGTAGACTAAGAATACAGCA 36539
|| |||| || |||| ||||| ||||||
Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGCA 16831
>seq200167
Length=15642
Score = 96.9 bits (106), Expect = 1e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416
|| ||||||| | ||| | | ||||| ||||| || || ||||| | ||| || ||
Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748
Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476
|| ||||||||||| ||||| || ||||| || || ||| || |||||||| || ||
Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808
Query 36477 ATACCAAGAGGCATACCA 36494
|| || ||||||||||||
Sbjct 10809 ATTCCTAGAGGCATACCA 10826
>seq198484
Length=6561
Score = 86.0 bits (94), Expect = 2e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 6377 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 6318
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058
|| |||||||||| || || ||||| ||
Sbjct 6317 GTTAGCACGGTTAATGATATCGGCCCAGGT 6288
>seq198258
Length=3934
Score = 86.0 bits (94), Expect = 2e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416
|| ||||||||| |||| || || |||||||| || || ||||| | ||| || ||
Sbjct 3279 CCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 3220
Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476
|| || | |||||||||||| || |||| || || | || || |||||||| | ||
Sbjct 3219 GGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGAT 3160
Query 36477 ATACCAAGAGGCATACCATCAG 36498
|| || | |||||| ||| |||
Sbjct 3159 ATTCCCATAGGCATCCCACCAG 3138
>seq197639
Length=228
Score = 86.0 bits (94), Expect = 2e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 106 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 165
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058
|| |||||||||| || || ||||| ||
Sbjct 166 GTTAGCACGGTTAATGATATCGGCCCAGGT 195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150096708110862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |