Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq198569 237 5e-58 seq197706 131 5e-26 seq197127 127 6e-25 seq200167 96.9 1e-15 seq198484 86.0 2e-12 seq198258 86.0 2e-12 seq197639 86.0 2e-12 >seq198569 Length=8129 Score = 237 bits (262), Expect = 5e-58 Identities = 326/450 (72%), Gaps = 18/450 (4%) Strand=Plus/Minus Query 36177 GCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 36236 || ||||| ||||||||| || || || || |||||||| |||||||| | || Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158 Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296 ||||| || |||||||| || ||||| ||||| || || || ||||| || ||| | || Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098 Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG-TAACAAGACT 36355 || ||| ||| ||| || ||||| | || || ||| || |||| Sbjct 3097 CC----TTC----ATT--AGCGGGGTGGTTTCCCTGATTAG-----AAGCTACCAAGGAA 3053 Query 36356 TCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAA 36415 || ||||||||| ||||| || || | ||||| || || ||||| | ||||| ||| Sbjct 3052 -CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAA 2994 Query 36416 C-GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTG 36474 || ||||||||||||||||| || ||||| || || | ||| || |||||||| || | Sbjct 2993 ATGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAG 2934 Query 36475 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 36534 | || || |||||||| |||||||| ||||| ||||| |||| || |||| ||||| | Sbjct 2933 AGATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAA 2874 Query 36535 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTA 36594 ||||| || ||||||||||| |||||||| || ||| ||||| || | |||||| | Sbjct 2873 CAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCA 2814 Query 36595 GTCTATAACTAAGTTCCCATTGTCGTCCCA 36624 | ||||||||||||| | || |||| Sbjct 2813 AACGGAAACTAAGTTCCCACTCACGACCCA 2784 >seq197706 Length=393 Score = 131 bits (144), Expect = 5e-26 Identities = 216/313 (69%), Gaps = 9/313 (3%) Strand=Plus/Minus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| || | ||| || || || || |||||||| || || | || |||| Sbjct 358 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCA 299 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||| || ||||| ||||| | || || || || | || | || || || Sbjct 298 GCTTCCCATATCGGGTAAAAGTGCAAGCCTATAGCTGCAGAAGTAGGAATAATGGCACCT 239 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 ||||| || ||||| ||||| |||| | || || ||||| |||||||||||||| ||| Sbjct 238 GAGATAATATTGTTCCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATA 179 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAG---- 36883 || || ||||| ||||||| || || || | |||| | | ||| ||||| || Sbjct 178 TCGACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAGGGTG 119 Query 36884 -----TGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 36938 | ||||||||| | || ||| |||| || | || || | ||| || || || Sbjct 118 GGGTCCGTAGGGATCATCAAAACACCATACCATCCAATGTAAAGACAGTTTTTAGTGCTA 59 Query 36939 GTAACCCAGTCAC 36951 || | |||| || Sbjct 58 GTTATTCAGTTAC 46 >seq197127 Length=16832 Score = 127 bits (140), Expect = 6e-25 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 36390 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 36449 || || || ||||| | ||| || || || ||||||||||||||||| || ||||| || Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 36450 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 36509 || | ||| || |||||||| || || || || |||||||| |||||||| ||||| ||| Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 36510 TGTCCAAAAGGGTAGACTAAGAATACAGCA 36539 || |||| || |||| ||||| |||||| Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGCA 16831 >seq200167 Length=15642 Score = 96.9 bits (106), Expect = 1e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||| | ||| | | ||||| ||||| || || ||||| | ||| || || Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || ||||||||||| ||||| || ||||| || || ||| || |||||||| || || Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808 Query 36477 ATACCAAGAGGCATACCA 36494 || || |||||||||||| Sbjct 10809 ATTCCTAGAGGCATACCA 10826 >seq198484 Length=6561 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 6377 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 6318 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || |||||||||| || || ||||| || Sbjct 6317 GTTAGCACGGTTAATGATATCGGCCCAGGT 6288 >seq198258 Length=3934 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| |||| || || |||||||| || || ||||| | ||| || || Sbjct 3279 CCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 3220 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || || | |||||||||||| || |||| || || | || || |||||||| | || Sbjct 3219 GGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGAT 3160 Query 36477 ATACCAAGAGGCATACCATCAG 36498 || || | |||||| ||| ||| Sbjct 3159 ATTCCCATAGGCATCCCACCAG 3138 >seq197639 Length=228 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 106 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 165 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || |||||||||| || || ||||| || Sbjct 166 GTTAGCACGGTTAATGATATCGGCCCAGGT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150096708110862