Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 266 1e-66
seq200167 141 3e-29
seq197127 136 1e-27
seq198258 116 1e-21
seq198484 100 9e-17
seq197639 100 9e-17
>seq198569
Length=8129
Score = 266 bits (294), Expect = 1e-66
Identities = 349/478 (73%), Gaps = 18/478 (4%)
Strand=Plus/Minus
Query 5399 GCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTC 5458
|| ||||| ||||||||| ||| ||||| || |||||||| |||||||| | ||
Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158
Query 5459 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATAT 5518
||||| || |||||||| || ||||| ||||| ||||| |||||||| || ||| | ||
Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098
Query 5519 CCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTT 5578
|| | || ||| || ||||| | || || ||| || ||||
Sbjct 3097 CCTTCATT----------AGCGGGGTGGTTTCCCTGATTAG--AAGC--TACCAAGGAA- 3053
Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638
|||||||||||| ||| | || || | ||||| ||||| ||||| | ||| | |||
Sbjct 3052 CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAAA 2993
Query 5639 -GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGA 5697
|| ||||||||||||||||| || ||||||||||||| ||| ||||| |||||||||||
Sbjct 2992 TGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAGA 2933
Query 5698 GATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATAC 5757
||| || |||||||| |||||| |||||||| || || | || || | || || ||
Sbjct 2932 GATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAAC 2873
Query 5758 TG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTA 5816
| ||||| | || ||||| || ||||||||||| || |||||| |||||||| || |
Sbjct 2872 AGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCA 2814
Query 5817 ATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTG 5874
| | | ||||||||||||| | || |||| ||| || | ||||| | ||||||
Sbjct 2813 AACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTG 2756
>seq200167
Length=15642
Score = 141 bits (156), Expect = 3e-29
Identities = 114/138 (83%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638
|||||||||| | ||||| | ||||| ||||| ||||| ||||| | |||||| ||
Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748
Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698
|| ||||||||||| ||||| || |||||||||||| ||| ||||| ||||||||||||
Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808
Query 5699 ATACCAAGAGGCATACCA 5716
|| || ||||||||||||
Sbjct 10809 ATTCCTAGAGGCATACCA 10826
>seq197127
Length=16832
Score = 136 bits (150), Expect = 1e-27
Identities = 105/125 (84%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671
|| ||||| ||||| | |||||| || || ||||||||||||||||| || |||||||||
Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741
Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731
|||| ||| ||||| |||||||||||||| || |||||||| |||||| ||||||||
Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801
Query 5732 TGTCC 5736
|| ||
Sbjct 16802 TGACC 16806
>seq198258
Length=3934
Score = 116 bits (128), Expect = 1e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638
|||||||||||| || | || || |||||||| ||||| ||||| | |||||| ||
Sbjct 3279 CCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 3220
Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698
|| || | |||||||||||| || |||| |||||||| || ||||| ||||||| |||
Sbjct 3219 GGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGAT 3160
Query 5699 ATACCAAGAGGCATACCATCACTGAAA 5725
|| || | |||||| ||| || | |||
Sbjct 3159 ATTCCCATAGGCATCCCACCAGTCAAA 3133
>seq198484
Length=6561
Score = 100 bits (110), Expect = 9e-17
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 6377 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 6318
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGT 5280
||| |||||||| | || ||| ||||| ||
Sbjct 6317 GTTAGCACGGTTAATGATATCGGCCCAGGT 6288
>seq197639
Length=228
Score = 100 bits (110), Expect = 9e-17
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 106 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 165
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGT 5280
||| |||||||| | || ||| ||||| ||
Sbjct 166 GTTAGCACGGTTAATGATATCGGCCCAGGT 195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152286689219058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |