Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq198569 266 1e-66 seq200167 141 3e-29 seq197127 136 1e-27 seq198258 116 1e-21 seq198484 100 9e-17 seq197639 100 9e-17 >seq198569 Length=8129 Score = 266 bits (294), Expect = 1e-66 Identities = 349/478 (73%), Gaps = 18/478 (4%) Strand=Plus/Minus Query 5399 GCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTC 5458 || ||||| ||||||||| ||| ||||| || |||||||| |||||||| | || Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158 Query 5459 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATAT 5518 ||||| || |||||||| || ||||| ||||| ||||| |||||||| || ||| | || Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098 Query 5519 CCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTT 5578 || | || ||| || ||||| | || || ||| || |||| Sbjct 3097 CCTTCATT----------AGCGGGGTGGTTTCCCTGATTAG--AAGC--TACCAAGGAA- 3053 Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | || || | ||||| ||||| ||||| | ||| | ||| Sbjct 3052 CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAAA 2993 Query 5639 -GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGA 5697 || ||||||||||||||||| || ||||||||||||| ||| ||||| ||||||||||| Sbjct 2992 TGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAGA 2933 Query 5698 GATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATAC 5757 ||| || |||||||| |||||| |||||||| || || | || || | || || || Sbjct 2932 GATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAAC 2873 Query 5758 TG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTA 5816 | ||||| | || ||||| || ||||||||||| || |||||| |||||||| || | Sbjct 2872 AGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCA 2814 Query 5817 ATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTG 5874 | | | ||||||||||||| | || |||| ||| || | ||||| | |||||| Sbjct 2813 AACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTG 2756 >seq200167 Length=15642 Score = 141 bits (156), Expect = 3e-29 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||| | ||||| | ||||| ||||| ||||| ||||| | |||||| || Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || ||||||||||| ||||| || |||||||||||| ||| ||||| |||||||||||| Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808 Query 5699 ATACCAAGAGGCATACCA 5716 || || |||||||||||| Sbjct 10809 ATTCCTAGAGGCATACCA 10826 >seq197127 Length=16832 Score = 136 bits (150), Expect = 1e-27 Identities = 105/125 (84%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| ||||| | |||||| || || ||||||||||||||||| || ||||||||| Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 |||| ||| ||||| |||||||||||||| || |||||||| |||||| |||||||| Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 5732 TGTCC 5736 || || Sbjct 16802 TGACC 16806 >seq198258 Length=3934 Score = 116 bits (128), Expect = 1e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| || | || || |||||||| ||||| ||||| | |||||| || Sbjct 3279 CCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 3220 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || || | |||||||||||| || |||| |||||||| || ||||| ||||||| ||| Sbjct 3219 GGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGAT 3160 Query 5699 ATACCAAGAGGCATACCATCACTGAAA 5725 || || | |||||| ||| || | ||| Sbjct 3159 ATTCCCATAGGCATCCCACCAGTCAAA 3133 >seq198484 Length=6561 Score = 100 bits (110), Expect = 9e-17 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 6377 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 6318 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 ||| |||||||| | || ||| ||||| || Sbjct 6317 GTTAGCACGGTTAATGATATCGGCCCAGGT 6288 >seq197639 Length=228 Score = 100 bits (110), Expect = 9e-17 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 106 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 165 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 ||| |||||||| | || ||| ||||| || Sbjct 166 GTTAGCACGGTTAATGATATCGGCCCAGGT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152286689219058