Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq198569 237 5e-58 seq197706 136 1e-27 seq197127 127 6e-25 seq200167 96.9 1e-15 seq198258 86.0 2e-12 seq198484 84.2 7e-12 seq197639 84.2 7e-12 >seq198569 Length=8129 Score = 237 bits (262), Expect = 5e-58 Identities = 326/450 (72%), Gaps = 18/450 (4%) Strand=Plus/Minus Query 25657 GCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 25716 || ||||| ||||||||| ||| || || || |||||||| |||||||| | || Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158 Query 25717 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 25776 ||||| || |||||||| || ||||| ||||| || || || ||||| || ||| | || Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098 Query 25777 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG-TAACAAGACT 25835 || ||| ||| ||| || ||||| | || || ||| || |||| Sbjct 3097 CC----TTC----ATT--AGCGGGGTGGTTTCCCTGATTAG-----AAGCTACCAAGGAA 3053 Query 25836 TCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAA 25895 || ||||||||| ||||| || || | ||||| || || ||||| | ||||| ||| Sbjct 3052 -CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAA 2994 Query 25896 C-GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTG 25954 || ||||||||||||||||| || ||||| || || | ||| || |||||||| || | Sbjct 2993 ATGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAG 2934 Query 25955 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 26014 | || || |||||||| |||||||| ||||| ||||| |||| || |||| ||||| | Sbjct 2933 AGATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAA 2874 Query 26015 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTA 26074 ||||| || ||||||||||| |||||||| || ||| ||||| || | ||| || | Sbjct 2873 CAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCA 2814 Query 26075 GTCTATAACTAAGTTCCCATTGTCGTCCCA 26104 | ||||||||||||| | || |||| Sbjct 2813 AACGGAAACTAAGTTCCCACTCACGACCCA 2784 >seq197706 Length=393 Score = 136 bits (150), Expect = 1e-27 Identities = 217/313 (69%), Gaps = 9/313 (3%) Strand=Plus/Minus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| || | ||| || || || || || ||||| || || | || |||| Sbjct 358 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCA 299 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||| || ||||| ||||| | || || || ||| | || | || || ||| Sbjct 298 GCTTCCCATATCGGGTAAAAGTGCAAGCCTATAGCTGCAGAAGTAGGAATAATGGCACCT 239 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 ||||| || ||||| ||||| |||| | || || ||||| |||||||||||||| ||| Sbjct 238 GAGATAATATTGTTCCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATA 179 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAG---- 26363 || || ||||| ||||||| || || || | |||| | | ||| ||||| || Sbjct 178 TCGACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAGGGTG 119 Query 26364 -----TGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 26418 | ||||||||| | || ||| |||| || | || || | ||| || || || Sbjct 118 GGGTCCGTAGGGATCATCAAAACACCATACCATCCAATGTAAAGACAGTTTTTAGTGCTA 59 Query 26419 GTAACCCAGTCAC 26431 || | |||| || Sbjct 58 GTTATTCAGTTAC 46 >seq197127 Length=16832 Score = 127 bits (140), Expect = 6e-25 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || || ||||||||||||||||| || ||||| || Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 || | ||| || |||||||| || || || || |||||||| |||||||| ||||| ||| Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 || |||| || |||| ||||| |||||| Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGCA 16831 >seq200167 Length=15642 Score = 96.9 bits (106), Expect = 1e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||| | ||| | | ||||| ||||| || || ||||| | ||| || || Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || ||||||||||| ||||| || ||||| || || ||| || |||||||| || || Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808 Query 25957 ATACCAAGAGGCATACCA 25974 || || |||||||||||| Sbjct 10809 ATTCCTAGAGGCATACCA 10826 >seq198258 Length=3934 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| |||| || || |||||||| || || ||||| | ||| || || Sbjct 3279 CCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 3220 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || || | |||||||||||| || |||| || || | || || |||||||| | || Sbjct 3219 GGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGAT 3160 Query 25957 ATACCAAGAGGCATACCATCAG 25978 || || | |||||| ||| ||| Sbjct 3159 ATTCCCATAGGCATCCCACCAG 3138 >seq198484 Length=6561 Score = 84.2 bits (92), Expect = 7e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 6373 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 6314 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||||| || || ||||| || Sbjct 6313 GCACGGTTAATGATATCGGCCCAGGT 6288 >seq197639 Length=228 Score = 84.2 bits (92), Expect = 7e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 110 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 169 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||||| || || ||||| || Sbjct 170 GCACGGTTAATGATATCGGCCCAGGT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151632248800428