Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq194543 109 4e-19 seq181690 100 2e-16 seq116321 91.5 1e-13 seq176217 87.8 1e-12 seq156113 87.8 1e-12 >seq194543 Length=10949 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| ||||||| |||| | || | || ||||||||||| || ||||| Sbjct 3901 CTCCTTCTGGATATTATAATCAGCTAGAGTCCGCCCATCTTCCAACTGCTTCCCAGCAAA 3842 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||||||||| | |||| |||||||| || ||||| || ||| Sbjct 3841 AATCAATCTCTGTTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTCACATT 3782 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| ||||| || || || |||||||| || || Sbjct 3781 GTCAATTGTATCAGAACTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGAC 3722 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 3721 AAATATCTGCATC 3709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || || ||||| ||| | ||| ||| || || ||||| ||||| | | Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||||||||||||||||||| |||| ||||| ||||| | ||| Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || || || || ||| | | | || || || ||| || Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGACT 3529 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| ||||| || || | ||||| || || || |||||| Sbjct 3528 TCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCATC 3481 >seq181690 Length=5866 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| || ||||| || || || |||| || | || |||| ||| Sbjct 2525 ACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCGAGGGTACGGCCGTCCTCC 2584 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| |||| || ||| ||||| | |||| ||||| ||||| | Sbjct 2585 AGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGAATACCCTCTTTGTCTTGA 2644 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | || || || |||||| |||| || || || || Sbjct 2645 ATCTTTGACTTCACGTTATCAATAGTGTCAGAGTTCTCCACTTCCAAAGTGATGGTCTTC 2704 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || || || |||||||||||| Sbjct 2705 CCTGTCAATGTCTTCACGAAAATCTGCATC 2734 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| ||||| |||| || | | | Sbjct 2744 AGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTCCTT 2803 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || || ||||| |||| | ||| ||||||| |||| |||||| Sbjct 2804 CCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTCC 2863 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||| ||||| | | | ||||| ||||||||||| || Sbjct 2864 TTGTCCTGAATTTTTGCCTTTACGTTGTCAATTGTGTCTGAACTCTCCACCTCCAAAGTG 2923 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| || ||||| Sbjct 2924 ATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || || | ||||| || || || ||| ||||| ||||||||||||| | Sbjct 3419 CCGCCTCTGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCT 3478 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || |||||||| || || ||||| || || | || || || | |||| Sbjct 3479 AGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGA 3538 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || |||||| || ||| | | | | || || |||||| Sbjct 3539 ATCCCTTCCTTATCTTGGATCTTTGCCTTGACATTATCAATTGTATCAGAGCTTTCCACC 3598 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | ||||| ||||| ||||||||| Sbjct 3599 TCAAGGGTGATGGTCTTACCGGTGAGGGTTTTCACAAAGATCTGCATC 3646 >seq116321 Length=1411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||||||| || || ||| || |||||||||||||| | Sbjct 1090 CCACCCCTGAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 1031 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| |||| || | || || ||||| || || || | ||| || || | || Sbjct 1030 AAGGTCCGACCGTCCTCGAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGG 971 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | | ||||| ||||||| Sbjct 970 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTCTCCACC 911 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || ||||| ||||| || || || || ||||||||| Sbjct 910 TCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATC 863 >seq176217 Length=4970 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| || ||||| || || || || | || | || Sbjct 1845 AGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCAAGGGTGCGG 1904 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || |||| | ||| ||||||| |||| |||||| Sbjct 1905 CCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGAATCCCCTCC 1964 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | | || || ||| ||||||| || Sbjct 1965 TTATCTTGGATCTTCGCCTTGACATTATCAATTGTATCGGAACTCTCAACCTCCAAGGTT 2024 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || |||||||||||||| Sbjct 2025 ATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062 >seq156113 Length=3066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || || ||||||| ||| | || | || ||||| ||||| || || || Sbjct 1305 CTCCTTCTGGATGTTATAATCAGCCAGAGTCCGCCCATCTTCCAATTGCTTCCCAGCGAA 1246 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||| | |||| |||||||| || ||||| |||||| Sbjct 1245 AATCAACCTCTGCTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTTACATT 1186 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| ||||| || || || |||||||| || || Sbjct 1185 GTCAATCGTATCAGAGCTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGAC 1126 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 1125 AAATATCTGCATC 1113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380008122136569