Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq198569 275 7e-69 seq197127 129 6e-25 seq200167 127 2e-24 seq198258 114 1e-20 seq198484 109 6e-19 seq197886 109 6e-19 seq197639 93.3 5e-14 seq198248 86.0 7e-12 >seq198569 Length=8129 Score = 275 bits (304), Expect = 7e-69 Identities = 330/447 (74%), Gaps = 16/447 (4%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| || |||||||| |||||||| ||||||||| Sbjct 2786 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTTGCATAT 2845 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||||| |||||| ||||||| | |||||||| | Sbjct 2846 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGT 2905 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || || ||||||||||| |||| |||| |||| ||||| Sbjct 2906 TTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAG 2965 Query 163012 GCAGAGCACAACATCCTAATGCACCC-CTTCCATATGATTGGAGTCGCAGGTGTATTCGG 163070 || |||||||| ||||| |||||||| ||| ||||| | || || || |||||||| | Sbjct 2966 GCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGTATTGGA 3025 Query 163071 TGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAAC 163130 || || || || | ||||||||| ||||| |||| || | ||| ||||| ||||| Sbjct 3026 CGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAGGGAAAC 3080 Query 163131 TACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAA 163190 || || || | || || | || || ||||| || || ||||| || Sbjct 3081 CACCCCGC----------TAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAACTTATAA 3130 Query 163191 CATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAA 163250 ||||| ||||||||||| || ||||| || ||||||||||| ||||| ||||||||| Sbjct 3131 TATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 3190 Query 163251 CTCACGTTCACTTCACTTCTTCCTTGC 163277 ||| ||||| | || || ||||| || Sbjct 3191 CTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq197127 Length=16832 Score = 129 bits (142), Expect = 6e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| ||||||| | |||||||| ||| ||||| | |||||||| || Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| |||| |||| ||||| || |||||||| ||||| |||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGT 163064 || || || ||| | || || || ||||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq200167 Length=15642 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| || || ||||||||||| |||| ||| ||| ||||| || ||||||||| Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 ||||| |||||||| || || ||| | || || || |||||||| ||||| || || || Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703 Query 163084 AGTGCTATGCACGGTTCT 163101 ||| ||||||| |||||| Sbjct 10702 AGTACTATGCATGGTTCT 10685 >seq198258 Length=3934 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||| | || || ||| ||||||| |||| | || |||| ||| | || |||||||| Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 ||||| | ||||| || || ||| | || || || ||||||||||| || || || ||| Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265 Query 163084 AGTGCTATGCACGGTTCTCTTGT 163106 ||||||||||| ||||| |||| Sbjct 3266 AGTGCTATGCATGGTTCCTTTGT 3288 >seq198484 Length=6561 Score = 109 bits (120), Expect = 6e-19 Identities = 113/147 (77%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACT 163398 || |||||||| ||||||||||| || ||||| ||| || || ||| ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGT---GTAATTAATACC 6290 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| |||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350 Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485 || |||||||| || ||||| || ||| Sbjct 6351 CATAACTTCCCTCTAGACCTAGCGGCT 6377 >seq197886 Length=1258 Score = 109 bits (120), Expect = 6e-19 Identities = 193/280 (69%), Gaps = 11/280 (4%) Strand=Plus/Plus Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273 |||| || ||||||||||| |||| |||| || || || | || | || ||||||| Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 163274 TTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCAT 163333 | ||| | ||||| | | |||| ||||| || | ||| | | |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 163334 TCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTG---ACGCAGGTGGTAAAGTGA 163390 ||||||| || ||||| || |||||||||||||| |||| | |||| || || | Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGT---GTAA 508 Query 163391 TTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGT-----TATGCA 163445 || |||||||| |||||| ||||| || |||||| | |||| ||| || Sbjct 509 TTAAGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCA 568 Query 163446 CGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 || ||||||||||| |||||||| || ||||| | |||| Sbjct 569 TGAACGTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608 >seq197639 Length=228 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 163387 GTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCAC 163446 || ||| ||| ||||| |||||| ||||| | || |||||||||||||||||||| Sbjct 204 GTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 145 Query 163447 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 || ||||||||||| |||||||| || ||||| || ||| Sbjct 144 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 >seq198248 Length=3867 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 163267 TTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACT 163326 || ||||| ||||| | ||||| || | |||||||||||||| | ||| | ||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 163327 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373 ||||| ||||| || || |||||||| ||||||||||| || ||||| Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551700684547320