Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 275 7e-69
seq197127 129 6e-25
seq200167 127 2e-24
seq198258 114 1e-20
seq198484 109 6e-19
seq197886 109 6e-19
seq197639 93.3 5e-14
seq198248 86.0 7e-12
>seq198569
Length=8129
Score = 275 bits (304), Expect = 7e-69
Identities = 330/447 (74%), Gaps = 16/447 (4%)
Strand=Plus/Plus
Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891
|||||| ||||||||||| || ||| || |||||||| |||||||| |||||||||
Sbjct 2786 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTTGCATAT 2845
Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951
|| || || || | || || ||||| |||||| ||||||| | |||||||| |
Sbjct 2846 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGT 2905
Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011
|| ||||| | |||||||| || || ||||||||||| |||| |||| |||| |||||
Sbjct 2906 TTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAG 2965
Query 163012 GCAGAGCACAACATCCTAATGCACCC-CTTCCATATGATTGGAGTCGCAGGTGTATTCGG 163070
|| |||||||| ||||| |||||||| ||| ||||| | || || || |||||||| |
Sbjct 2966 GCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGTATTGGA 3025
Query 163071 TGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAAC 163130
|| || || || | ||||||||| ||||| |||| || | ||| ||||| |||||
Sbjct 3026 CGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAGGGAAAC 3080
Query 163131 TACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAA 163190
|| || || | || || | || || ||||| || || ||||| ||
Sbjct 3081 CACCCCGC----------TAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAACTTATAA 3130
Query 163191 CATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAA 163250
||||| ||||||||||| || ||||| || ||||||||||| ||||| |||||||||
Sbjct 3131 TATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 3190
Query 163251 CTCACGTTCACTTCACTTCTTCCTTGC 163277
||| ||||| | || || ||||| ||
Sbjct 3191 CTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq197127
Length=16832
Score = 129 bits (142), Expect = 6e-25
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975
||||| |||||| ||||||| | |||||||| ||| ||||| | |||||||| ||
Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771
Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035
|| ||||||||||| |||| |||| |||| ||||| || |||||||| ||||| ||||||
Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711
Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGT 163064
|| || || ||| | || || || |||||
Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGGTGT 16682
>seq200167
Length=15642
Score = 127 bits (140), Expect = 2e-24
Identities = 111/138 (80%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023
|||||||| || || ||||||||||| |||| ||| ||| ||||| || |||||||||
Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763
Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083
||||| |||||||| || || ||| | || || || |||||||| ||||| || || ||
Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703
Query 163084 AGTGCTATGCACGGTTCT 163101
||| ||||||| ||||||
Sbjct 10702 AGTACTATGCATGGTTCT 10685
>seq198258
Length=3934
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023
|||||| | || || ||| ||||||| |||| | || |||| ||| | || ||||||||
Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205
Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083
||||| | ||||| || || ||| | || || || ||||||||||| || || || |||
Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265
Query 163084 AGTGCTATGCACGGTTCTCTTGT 163106
||||||||||| ||||| ||||
Sbjct 3266 AGTGCTATGCATGGTTCCTTTGT 3288
>seq198484
Length=6561
Score = 109 bits (120), Expect = 6e-19
Identities = 113/147 (77%), Gaps = 6/147 (4%)
Strand=Plus/Plus
Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACT 163398
|| |||||||| ||||||||||| || ||||| ||| || || ||| |||
Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGT---GTAATTAATACC 6290
Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458
||||| |||||| ||||| | || |||||||||||||||||||| || |||||||||
Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350
Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485
|| |||||||| || ||||| || |||
Sbjct 6351 CATAACTTCCCTCTAGACCTAGCGGCT 6377
>seq197886
Length=1258
Score = 109 bits (120), Expect = 6e-19
Identities = 193/280 (69%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273
|||| || ||||||||||| |||| |||| || || || | || | || |||||||
Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391
Query 163274 TTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCAT 163333
| ||| | ||||| | | |||| ||||| || | ||| | | ||||
Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451
Query 163334 TCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTG---ACGCAGGTGGTAAAGTGA 163390
||||||| || ||||| || |||||||||||||| |||| | |||| || || |
Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGT---GTAA 508
Query 163391 TTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGT-----TATGCA 163445
|| |||||||| |||||| ||||| || |||||| | |||| ||| ||
Sbjct 509 TTAAGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCA 568
Query 163446 CGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
|| ||||||||||| |||||||| || ||||| | ||||
Sbjct 569 TGAACGTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608
>seq197639
Length=228
Score = 93.3 bits (102), Expect = 5e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 163387 GTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCAC 163446
|| ||| ||| ||||| |||||| ||||| | || ||||||||||||||||||||
Sbjct 204 GTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 145
Query 163447 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
|| ||||||||||| |||||||| || ||||| || |||
Sbjct 144 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106
>seq198248
Length=3867
Score = 86.0 bits (94), Expect = 7e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 163267 TTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACT 163326
|| ||||| ||||| | ||||| || | |||||||||||||| | ||| | |||
Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332
Query 163327 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373
||||| ||||| || || |||||||| ||||||||||| || |||||
Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551700684547320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |