Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq198569 212 7e-50 seq198282 201 1e-46 seq199332 154 2e-32 seq198621 125 8e-24 seq198491 111 2e-19 seq200167 107 2e-18 seq198484 107 2e-18 seq100777 107 2e-18 seq198608 105 8e-18 seq197886 98.7 1e-15 seq198455 96.9 4e-15 seq197639 87.8 2e-12 >seq198569 Length=8129 Score = 212 bits (234), Expect = 7e-50 Identities = 304/427 (71%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278 |||||||| ||||| ||||||||| | || || |||||||| || ||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338 ||||| || || ||||||||||| || | || || ||| || ||||||| | |||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398 || ||| ||||| | ||||| || || |||||||| || ||||||| |||| | || Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCC-CTTCCATATGTTGGGAGTCGCTGGTGT 163457 ||||| || |||||||| ||||| |||||||| ||| ||||||| || || |||||||| Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 163458 CTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCG 163517 || | || || || ||| || |||||||| |||| || || || || | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGG-TTCCTTGGTAGCT----TCTAATCAG 3074 Query 163518 TGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 163577 || || || | || | || |||| ||||||||||| || || || Sbjct 3075 GGAAACCAC----------CCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 163578 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163637 || || || || || || ||||| || || || || ||||||||||||||||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 163638 CAACAAC 163644 ||||||| Sbjct 3185 CAACAAC 3191 >seq198282 Length=4172 Score = 201 bits (222), Expect = 1e-46 Identities = 218/289 (75%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 165301 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGT 165360 ||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || | Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 165361 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 165420 || | ||||| || ||||| ||||| || || | ||| | |||| || |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 165421 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAG 165480 | | ||||| || || ||||| ||||| || || ||||| |||||| || | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 165481 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTAC 165540 | |||||||| ||||||||||| ||||||||||||||||| || || ||||| || | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 165541 GTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 165589 |||||||| |||| || ||||| || ||||||||| |||| ||||| Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289 >seq199332 Length=2940 Score = 154 bits (170), Expect = 2e-32 Identities = 318/465 (68%), Gaps = 10/465 (2%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | |||| || || |||||||| || ||||| || || | || || Sbjct 2525 GATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 2466 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 | ||| ||| | ||| | || |||||| |||| || ||| | ||||| || ||| Sbjct 2465 TCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 2406 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797 || || || || | || ||||||| | || || ||| ||||| | || || || || Sbjct 2405 TATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCGGCAGT 2347 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || |||||| || | | | | ||| | | |||| |||||||| || | || Sbjct 2346 TTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAAGCACA 2287 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||||| ||| | || || || |||| || || ||||||||||| Sbjct 2286 AGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTCCACGG 2227 Query 164918 TGCCTTCGCCCTAA----TTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATT 164972 || || | |||| |||||||||| | || ||||| || || || ||| || Sbjct 2226 CGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATCT-GTT 2169 Query 164973 GGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTC 165032 | || ||||| ||||| || || ||||||| ||| ||||| |||||||| || Sbjct 2168 CAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTTCTGTA 2109 Query 165033 TTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTT-TTTCGCTCC 165076 ||||| || || || || |||||||| ||||||| |||| |||| Sbjct 2108 TTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTCACTCC 2064 >seq198621 Length=9897 Score = 125 bits (138), Expect = 8e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 165161 GGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGA 165220 ||| ||||| ||| | || || | || ||||||| ||||||||||| | ||| || || Sbjct 1 GGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGA 60 Query 165221 AAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACA 165280 |||||| |||| || ||||| || |||||||| || || ||| | | || || Sbjct 61 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCA 120 Query 165281 GGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCAT 165340 | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || | Sbjct 121 AGCCGAAGAAACTTATTCAATGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGT 180 Query 165341 TGCGTTTTCTAACAAGCGGTGG 165362 ||| ||||| || || || ||| Sbjct 181 TGCTTTTTCCAATAAACGTTGG 202 >seq198491 Length=6715 Score = 111 bits (122), Expect = 2e-19 Identities = 137/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 165060 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 165119 ||||||||||| | || |||||| || | || || ||| ||||| | | || || Sbjct 5667 AGTTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTT 5609 Query 165120 CAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTG 165179 ||||| ||| | || ||||| | ||||| || ||||||||||| ||||| ||| | || Sbjct 5608 CAAGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTA 5550 Query 165180 GGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGAT 165239 || | || ||||||| ||||||||||| | ||| || |||||||| |||| || ||| Sbjct 5549 GGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGAT 5490 Query 165240 GGAGA 165244 || || Sbjct 5489 GGTGA 5485 >seq200167 Length=15642 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416 ||||| || || |||||||| || ||||||| ||| || ||||| || ||||||||| Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763 Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTC 163476 ||||| |||||||| || || ||||| || || |||||||| || ||||| || || ||| Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703 Query 163477 TCGGCAATGCATGG 163490 | |||||||| Sbjct 10702 AGTACTATGCATGG 10689 >seq198484 Length=6561 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 163735 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGG 163794 || |||||||| |||||||| || | ||||| |||| || ||||| | || || ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 163795 GCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 163854 || || | ||||||| ||| || |||||||||||||||||||| ||||| || || Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 163855 AACTTCCCACTCGATCTTGCTGCT 163878 |||||||| || || || || ||| Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377 >seq100777 Length=1053 Score = 107 bits (118), Expect = 2e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 164874 TGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATT 164933 ||||| ||| | ||||| || |||| ||| || ||||| || || || |||| ||||| Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994 Query 164934 GGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGC 164992 ||||||||| | ||||| || || || || || ||| | | | || ||||| ||||| Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAAT-TACGACCTTATAATGC 935 Query 164993 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 165025 ||||| |||||||| || |||||||||||||| Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902 >seq198608 Length=9413 Score = 105 bits (116), Expect = 8e-18 Identities = 126/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 165363 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATT 165422 |||||||| || ||||| ||||| || || | ||| | |||| || |||| | Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928 Query 165423 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCA 165482 | ||||| || || ||||| ||||| || || ||||| |||||| || | ||||| Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868 Query 165483 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGA 165532 |||||||| ||||||||||| ||||||||| ||||||| || || || || Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACC-AAAACATTCTCTTAAACGA 2819 >seq197886 Length=1258 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 7/276 (3%) Strand=Plus/Plus Query 163609 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTT-CACTTCTTCCT 163667 || || |||||||||||||||| | || || || | | | || || |||||||| Sbjct 334 GGCCGATTGATCTTCCAATATGTTACTTTTAATAA-TTCTCATTTTTTACATTTCTTCCT 392 Query 163668 GGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATT 163727 | | |||||||| | || |||| ||| | || | || | ||| |||| | Sbjct 393 AACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGT 452 Query 163728 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAA 163787 |||||| || ||||| || |||||||| ||| | ||||| ||| |||||||| | || Sbjct 453 CAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAA 512 Query 163788 CACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGT-----TATGCATGAG 163842 |||||||| || | |||||| ||| | |||| | |||| ||| ||||| Sbjct 513 GACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAA 572 Query 163843 CGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878 ||||| || || |||||||| || || || | |||| Sbjct 573 CGTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608 >seq198455 Length=6199 Score = 96.9 bits (106), Expect = 4e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 165033 TTCCTTATCTACCCAC-TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 165091 ||||| || || |||| | ||| | || |||||||||| || || |||||| || Sbjct 6024 TTCCTGATTTATCCACCTTGGTGAATCTGGTTGGTTTTTTGCGCCAAGCTTTGGCGTATA 6083 Query 165092 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTT 165151 | | || ||| ||||| | | || ||||||| || || || ||||| | ||||| || Sbjct 6084 A-CTATATTTCGATTCATCCTTTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATT 6142 Query 165152 CCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGG 165208 ||||||||||| ||||| ||| | || || | || ||||||| ||||||||||| Sbjct 6143 TCATATGATGGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGG 6199 >seq197639 Length=228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 163763 TTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGG 163822 ||||| |||| || ||||| | || || ||||| || | ||||||| ||| || | Sbjct 221 TTGATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTG 162 Query 163823 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878 ||||||||||||||||||| ||||| || || |||||||| || || || || ||| Sbjct 161 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561800146855640