Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 212 7e-50
seq198282 201 1e-46
seq199332 154 2e-32
seq198621 125 8e-24
seq198491 111 2e-19
seq200167 107 2e-18
seq198484 107 2e-18
seq100777 107 2e-18
seq198608 105 8e-18
seq197886 98.7 1e-15
seq198455 96.9 4e-15
seq197639 87.8 2e-12
>seq198569
Length=8129
Score = 212 bits (234), Expect = 7e-50
Identities = 304/427 (71%), Gaps = 16/427 (4%)
Strand=Plus/Plus
Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278
|||||||| ||||| ||||||||| | || || |||||||| || ||||| |||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338
||||| || || ||||||||||| || | || || ||| || ||||||| | ||||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398
|| ||| ||||| | ||||| || || |||||||| || ||||||| |||| | ||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCC-CTTCCATATGTTGGGAGTCGCTGGTGT 163457
||||| || |||||||| ||||| |||||||| ||| ||||||| || || ||||||||
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019
Query 163458 CTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCG 163517
|| | || || || ||| || |||||||| |||| || || || || |
Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGG-TTCCTTGGTAGCT----TCTAATCAG 3074
Query 163518 TGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 163577
|| || || | || | || |||| ||||||||||| || || ||
Sbjct 3075 GGAAACCAC----------CCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124
Query 163578 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163637
|| || || || || || ||||| || || || || ||||||||||||||||| ||
Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184
Query 163638 CAACAAC 163644
|||||||
Sbjct 3185 CAACAAC 3191
>seq198282
Length=4172
Score = 201 bits (222), Expect = 1e-46
Identities = 218/289 (75%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 165301 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGT 165360
||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || |
Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60
Query 165361 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 165420
|| | ||||| || ||||| ||||| || || | ||| | |||| || ||||
Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120
Query 165421 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAG 165480
| | ||||| || || ||||| ||||| || || ||||| |||||| || | ||||
Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180
Query 165481 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTAC 165540
| |||||||| ||||||||||| ||||||||||||||||| || || ||||| || | |
Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240
Query 165541 GTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 165589
|||||||| |||| || ||||| || ||||||||| |||| |||||
Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289
>seq199332
Length=2940
Score = 154 bits (170), Expect = 2e-32
Identities = 318/465 (68%), Gaps = 10/465 (2%)
Strand=Plus/Minus
Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678
||||||||| | |||| || || |||||||| || ||||| || || | || ||
Sbjct 2525 GATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 2466
Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738
| ||| ||| | ||| | || |||||| |||| || ||| | ||||| || |||
Sbjct 2465 TCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 2406
Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797
|| || || || | || ||||||| | || || ||| ||||| | || || || ||
Sbjct 2405 TATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCGGCAGT 2347
Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857
|| || |||||| || | | | | ||| | | |||| |||||||| || | ||
Sbjct 2346 TTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAAGCACA 2287
Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917
|| |||| || ||||| ||| | || || || |||| || || |||||||||||
Sbjct 2286 AGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTCCACGG 2227
Query 164918 TGCCTTCGCCCTAA----TTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATT 164972
|| || | |||| |||||||||| | || ||||| || || || ||| ||
Sbjct 2226 CGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATCT-GTT 2169
Query 164973 GGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTC 165032
| || ||||| ||||| || || ||||||| ||| ||||| |||||||| ||
Sbjct 2168 CAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTTCTGTA 2109
Query 165033 TTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTT-TTTCGCTCC 165076
||||| || || || || |||||||| ||||||| |||| ||||
Sbjct 2108 TTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTCACTCC 2064
>seq198621
Length=9897
Score = 125 bits (138), Expect = 8e-24
Identities = 149/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 165161 GGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGA 165220
||| ||||| ||| | || || | || ||||||| ||||||||||| | ||| || ||
Sbjct 1 GGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGA 60
Query 165221 AAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACA 165280
|||||| |||| || ||||| || |||||||| || || ||| | | || ||
Sbjct 61 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCA 120
Query 165281 GGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCAT 165340
| ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || |
Sbjct 121 AGCCGAAGAAACTTATTCAATGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGT 180
Query 165341 TGCGTTTTCTAACAAGCGGTGG 165362
||| ||||| || || || |||
Sbjct 181 TGCTTTTTCCAATAAACGTTGG 202
>seq198491
Length=6715
Score = 111 bits (122), Expect = 2e-19
Identities = 137/185 (74%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 165060 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 165119
||||||||||| | || |||||| || | || || ||| ||||| | | || ||
Sbjct 5667 AGTTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTT 5609
Query 165120 CAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTG 165179
||||| ||| | || ||||| | ||||| || ||||||||||| ||||| ||| | ||
Sbjct 5608 CAAGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTA 5550
Query 165180 GGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGAT 165239
|| | || ||||||| ||||||||||| | ||| || |||||||| |||| || |||
Sbjct 5549 GGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGAT 5490
Query 165240 GGAGA 165244
|| ||
Sbjct 5489 GGTGA 5485
>seq200167
Length=15642
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416
||||| || || |||||||| || ||||||| ||| || ||||| || |||||||||
Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763
Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTC 163476
||||| |||||||| || || ||||| || || |||||||| || ||||| || || |||
Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703
Query 163477 TCGGCAATGCATGG 163490
| ||||||||
Sbjct 10702 AGTACTATGCATGG 10689
>seq198484
Length=6561
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 163735 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGG 163794
|| |||||||| |||||||| || | ||||| |||| || ||||| | || || |||
Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293
Query 163795 GCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 163854
|| || | ||||||| ||| || |||||||||||||||||||| ||||| || ||
Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353
Query 163855 AACTTCCCACTCGATCTTGCTGCT 163878
|||||||| || || || || |||
Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377
>seq100777
Length=1053
Score = 107 bits (118), Expect = 2e-18
Identities = 117/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 164874 TGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATT 164933
||||| ||| | ||||| || |||| ||| || ||||| || || || |||| |||||
Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994
Query 164934 GGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGC 164992
||||||||| | ||||| || || || || || ||| | | | || ||||| |||||
Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAAT-TACGACCTTATAATGC 935
Query 164993 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 165025
||||| |||||||| || ||||||||||||||
Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902
>seq198608
Length=9413
Score = 105 bits (116), Expect = 8e-18
Identities = 126/170 (74%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 165363 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATT 165422
|||||||| || ||||| ||||| || || | ||| | |||| || |||| |
Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928
Query 165423 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCA 165482
| ||||| || || ||||| ||||| || || ||||| |||||| || | |||||
Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868
Query 165483 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGA 165532
|||||||| ||||||||||| ||||||||| ||||||| || || || ||
Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACC-AAAACATTCTCTTAAACGA 2819
>seq197886
Length=1258
Score = 98.7 bits (108), Expect = 1e-15
Identities = 189/276 (68%), Gaps = 7/276 (3%)
Strand=Plus/Plus
Query 163609 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTT-CACTTCTTCCT 163667
|| || |||||||||||||||| | || || || | | | || || ||||||||
Sbjct 334 GGCCGATTGATCTTCCAATATGTTACTTTTAATAA-TTCTCATTTTTTACATTTCTTCCT 392
Query 163668 GGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATT 163727
| | |||||||| | || |||| ||| | || | || | ||| |||| |
Sbjct 393 AACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGT 452
Query 163728 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAA 163787
|||||| || ||||| || |||||||| ||| | ||||| ||| |||||||| | ||
Sbjct 453 CAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAA 512
Query 163788 CACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGT-----TATGCATGAG 163842
|||||||| || | |||||| ||| | |||| | |||| ||| |||||
Sbjct 513 GACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAA 572
Query 163843 CGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878
||||| || || |||||||| || || || | ||||
Sbjct 573 CGTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608
>seq198455
Length=6199
Score = 96.9 bits (106), Expect = 4e-15
Identities = 129/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 165033 TTCCTTATCTACCCAC-TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 165091
||||| || || |||| | ||| | || |||||||||| || || |||||| ||
Sbjct 6024 TTCCTGATTTATCCACCTTGGTGAATCTGGTTGGTTTTTTGCGCCAAGCTTTGGCGTATA 6083
Query 165092 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTT 165151
| | || ||| ||||| | | || ||||||| || || || ||||| | ||||| ||
Sbjct 6084 A-CTATATTTCGATTCATCCTTTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATT 6142
Query 165152 CCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGG 165208
||||||||||| ||||| ||| | || || | || ||||||| |||||||||||
Sbjct 6143 TCATATGATGGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGG 6199
>seq197639
Length=228
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 163763 TTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGG 163822
||||| |||| || ||||| | || || ||||| || | ||||||| ||| || |
Sbjct 221 TTGATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTG 162
Query 163823 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878
||||||||||||||||||| ||||| || || |||||||| || || || || |||
Sbjct 161 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561800146855640
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