Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq197427 163 5e-35 >seq197427 Length=19924 Score = 163 bits (180), Expect = 5e-35 Identities = 382/573 (67%), Gaps = 20/573 (3%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||||||||| || | ||||||||||||||| | ||| | | |||||||| Sbjct 13952 TACAGCAAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAG 14011 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | |||||||| | ||| | || |||||||||||| || || ||| || Sbjct 14012 AAGGTCAACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCG 14071 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || || || || || | ||| ||||||| || Sbjct 14072 GAGAAGAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCA 14131 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| |||||| || ||||| | |||||||| | | ||| || |||||||| Sbjct 14132 CCGTC---GATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCG 14188 Query 48362 ATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA-- 48416 || || |||| ||| | ||| ||| | ||| | || | ||||| Sbjct 14189 ATCGCGTGGAAAAGCCGGTCCTT---CTCGTTAGAATCCTTGATGTACGACTCGAGCAAG 14245 Query 48417 --GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGC 48474 ||| |||||| || ||||| | ||||| || ||||| ||||| ||||| ||||| Sbjct 14246 AGGCT----GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGC 14301 Query 48475 CCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTAT 48534 ||||||||| ||||| || || | ||| || | ||| ||||| ||| || Sbjct 14302 TCTGGCCTCAGCTACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGAT 14361 Query 48535 CCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT 48594 || || || || || |||||||| ||||| || | | ||| || ||||||| || ||| Sbjct 14362 ACCGTCAGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGT 14421 Query 48595 GAGAG---CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAA 48651 || | | | |||| | | ||| | || || |||||||| | |||||||| Sbjct 14422 CAGGGTTTCCTCCCAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAA 14481 Query 48652 GGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 ||| || |||||| |||||||| |||| || Sbjct 14482 GGAGGCTTCTGCTTTCTTGTACATTTCCCAGAT 14514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929201604235520