Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq197427 141 2e-28 >seq197427 Length=19924 Score = 141 bits (156), Expect = 2e-28 Identities = 380/571 (67%), Gaps = 14/571 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || || ||| |||||| || ||||| | ||||| Sbjct 14514 ATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTTCTGGACGGCTGAAGAAGTCGATCTC 14455 Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| | | | || || | ||||||| || || ||| Sbjct 14454 TCCTCCGACCTCCGCCACTGGGAGGAAACCCTGACCGACGACGAGCGACACTTCATCACC 14395 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || |||||||| ||||| || ||||| ||| || || Sbjct 14394 CACGTCCTCGCCTTCTTCGCCGCCTCTGACGGTATCGTCTTGGAGAACCTGGCCGGCAGG 14335 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCA-AGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| || ||| | ||||||| || ||| ||||| ||||| || ||||| Sbjct 14334 TTCATGAAGGAGGTCCAGGTAGCTGAGGCCAGAGCCTTT-TACGGCTTCCAAATCGCCAT 14276 Query 25713 CGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTT-CTGATGACGTACATTACAGACGTC 25770 ||| || | ||||| || |||| ||| ||| || | ||||||| | || Sbjct 14275 CGAGAACATCCACTCCGAAATGTACAGCCT--CTTGCTCGAGTCGTACATCAAGGATTCT 14218 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||| || ||||| || || |||||| || || || | | | |||||| Sbjct 14217 AACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGATCCCTTGCGTGGAAAAGAAGGCC 14158 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||| | ||||||||| || | ||| | || | |||||| | || ||| Sbjct 14157 AAGTGGGCCCTCAAGTGGATCGACGGTG---GCGAGTCTTTCGCCGAGCGAATCGTTGCC 14101 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 |||||| || || || || || ||| ||| || |||| | |||||||||||||| Sbjct 14100 TTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCG-CGATCTTCTGGCTCAA 14042 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || ||| ||||| ||| || ||| ||||||||| | ||| || ||||| || Sbjct 14041 AAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGATCTCAAGAGACGAAGG 13982 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | ||| | |||||||||||| |||| ||| Sbjct 13981 CTTGCACTGCGATTTTGCCTGCTTGCTGTAC 13951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926520331056320