Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq198569 246 9e-61 seq197706 149 2e-31 seq197127 125 2e-24 seq200167 100 9e-17 seq198258 95.1 4e-15 seq198484 87.8 5e-13 seq197639 80.6 8e-11 >seq198569 Length=8129 Score = 246 bits (272), Expect = 9e-61 Identities = 317/430 (74%), Gaps = 22/430 (5%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || ||||| || |||||||| || |||||| Sbjct 3190 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 3131 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 ||||| || || || ||||| |||||| | || || | || ||| || Sbjct 3130 TTATAAGTTTCCTCCTCTTGACCAAATCTGTACCCTTCATT----------AGCGGGGTG 3081 Query 18186 GTTTCTCTAATAAGTGAGGAAG-TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 18244 ||||| || || || ||| || |||| || ||||||||| ||||| || || Sbjct 3080 GTTTCCCTGATTAG-----AAGCTACCAAGGAA-CCATGCATAGCATTGAATAGAGAGCC 3027 Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAAC-GGATGCATAAGGATATTGTGTTCGG 18303 | ||||| || || ||||| | ||||| ||| || ||||||||||||||||| || | Sbjct 3026 GTCCAATACACCAGCTACACCTAACATATCGAAATGGGTGCATAAGGATATTGTGCTCAG 2967 Query 18304 CTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGA 18363 | |||||||||| |||||| ||||||||||| || || |||||||| |||||||| | Sbjct 2966 CCTGGAATACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAA 2907 Query 18364 AACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGC 18421 |||| ||||| |||| ||||| | | ||||| || | || || ||||||| || || || Sbjct 2906 AACTTCCTTGACCAATTGGATAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGC 2849 Query 18422 GGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCG 18481 ||||| |||||| |||||| || |||||||| | | ||||||||||||| | || Sbjct 2848 TGAATATGCAACAGCAATCCAAGGTCGCATACCCAAACGGAAACTAAGTTCCCACTCACG 2789 Query 18482 TCCCATGTAA 18491 ||||| ||| Sbjct 2788 ACCCATATAA 2779 >seq197706 Length=393 Score = 149 bits (164), Expect = 2e-31 Identities = 220/313 (70%), Gaps = 9/313 (3%) Strand=Plus/Minus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| || | ||| || || || || |||||||| || || | || |||| Sbjct 358 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCA 299 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||| || ||||| ||||| | || || || ||| | || | || || ||| Sbjct 298 GCTTCCCATATCGGGTAAAAGTGCAAGCCTATAGCTGCAGAAGTAGGAATAATGGCACCT 239 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || ||||| ||||| |||| | || || ||||| |||||||||||||| || Sbjct 238 GAGATAATATTGTTCCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATA 179 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAG---- 18745 || || ||||||||||||| || || || | |||| | | || ||| ||||| || Sbjct 178 TCGACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCAGTTAATAGGGTG 119 Query 18746 -----TGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTC 18800 | ||||||||| | || ||| |||| || | ||| || | ||| || || || Sbjct 118 GGGTCCGTAGGGATCATCAAAACACCATACCATCCAATGTAAAGACAGTTTTTAGTGCTA 59 Query 18801 GTAACCCAGTCAC 18813 || | |||| || Sbjct 58 GTTATTCAGTTAC 46 >seq197127 Length=16832 Score = 125 bits (138), Expect = 2e-24 Identities = 115/144 (80%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || || ||||| | ||| || || || ||||||||||||||||| || || |||||| Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 18312 ACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCT 18371 |||| |||||| ||||||||||| || || |||||||| |||||||| ||||| ||| Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 18372 TGTCCAAAAGGATA-AACGAGAAA 18394 || |||| ||||| | | ||||| Sbjct 16802 TGACCAATTGGATAGATCAAGAAA 16825 >seq200167 Length=15642 Score = 100 bits (110), Expect = 9e-17 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||| | ||| | | ||||| ||||| || || ||||| | ||| || || Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || ||||||||||| ||||| || || ||||||||| ||| || ||||||||||| Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808 Query 18339 ATACCAAGAGGCATACCA 18356 || || |||||||||||| Sbjct 10809 ATTCCTAGAGGCATACCA 10826 >seq198258 Length=3934 Score = 95.1 bits (104), Expect = 4e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| |||| || || |||||||| || || ||||| | ||| || || Sbjct 3279 CCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 3220 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || || | |||||||||||| || || | |||||||| || ||| |||||||||| Sbjct 3219 GGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGAT 3160 Query 18339 ATACCAAGAGGCATACCATCAG 18360 || || | |||||| ||| ||| Sbjct 3159 ATTCCCATAGGCATCCCACCAG 3138 >seq198484 Length=6561 Score = 87.8 bits (96), Expect = 5e-13 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 |||| ||||| |||||||||||||||||||| || ||||||||||| | ||||||||| Sbjct 6373 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 6314 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAATG 17951 || | ||| | | || ||||| ||| | || | ||| | | | ||||| Sbjct 6313 GCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACA--- 6257 Query 17952 GATTGGTTGAAGTTGAATCCATT 17974 ||||||||||| ||||| ||||| Sbjct 6256 GATTGGTTGAAATTGAAACCATT 6234 >seq197639 Length=228 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 |||| ||||| |||||||||||||||||||| || ||||||||||| | ||||||||| Sbjct 110 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 169 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTA 17921 || | ||| | | || ||||| ||| Sbjct 170 GCACGGTTAATGATATCGGCCCAGGTA 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150958654028082