Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq198569 239 1e-58 seq197127 120 9e-23 seq197706 114 4e-21 seq200167 102 2e-17 seq198484 96.9 1e-15 seq198258 93.3 1e-14 seq198688 82.4 2e-11 >seq198569 Length=8129 Score = 239 bits (264), Expect = 1e-58 Identities = 339/477 (71%), Gaps = 16/477 (3%) Strand=Plus/Minus Query 21675 GCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGA 21734 || || || ||||| | | ||| || || || || ||||||||||||||||| | || Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158 Query 21735 CCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794 |||||||| || |||||||| |||||||| ||||| || |||||||||||||| |||| Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098 Query 21795 CCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTA 21854 || | || | || || || | || || | | |||| | | Sbjct 3097 CCTTCATTAGCGGG----------GTGGTTTCCCTGATTAG-----AAGCTACCAAGGAA 3053 Query 21855 CCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGT-GAAA 21913 || ||||||||| ||| | | || | ||||| || || ||||| | ||| | |||| Sbjct 3052 CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAAA 2993 Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973 || |||||||| |||||||||||||||||||| || | |||| ||||||| || || || Sbjct 2992 TGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAGA 2933 Query 21974 TATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACAC 22033 || || | ||||| ||||||||||| || || |||| ||||| | | ||| || Sbjct 2932 GATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAAC 2873 Query 22034 AGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAG 22093 |||||| ||||| || |||||||| || || |||||| ||||| || | ||| || | Sbjct 2872 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAA 2813 Query 22094 TCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTG 22150 || | |||||||||||||| || ||||| ||| | || |||| | |||||| Sbjct 2812 ACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTG 2756 >seq197127 Length=16832 Score = 120 bits (132), Expect = 9e-23 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21888 ACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAAC 21947 || || || ||||| | ||||||||| || |||||||| |||||||||||||||||||| Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 21948 ACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCC 22007 || | |||| ||||||| || || || || || | ||||| ||||||||||| || Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 22008 TGTCCAAACGGATAAACAAGGAACACAGCAG 22038 || |||| ||||| | | ||| ||||||| Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGCAG 16832 >seq197706 Length=393 Score = 114 bits (126), Expect = 4e-21 Identities = 184/264 (70%), Gaps = 3/264 (1%) Strand=Plus/Minus Query 22111 ACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATG 22170 |||| || ||||| ||| | || |||| | |||||| | || | || | | | Sbjct 393 ACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 334 Query 22171 GACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTA 22230 ||||||| ||||| | ||||||||||| | ||||||||||| || ||||| ||||| | Sbjct 333 GACCGCCATTGTATAACCATTCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCA 274 Query 22231 GTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACA 22290 || || || | | |||| | ||| ||||| || || ||||| ||||| | | Sbjct 273 AGCCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTA 214 Query 22291 GGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGG 22350 | || |||| || ||||| || || ||||| || || || || || || ||| |||| Sbjct 213 GAGACCCAGAAACAGGTTCACGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGG 154 Query 22351 CGATAATAAA---ACAAGTTGTAG 22371 |||||||||| | |||||| || Sbjct 153 CGATAATAAATACAGAAGTTGCAG 130 >seq200167 Length=15642 Score = 102 bits (112), Expect = 2e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 21854 ACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913 ||| ||||||| | ||||| ||||||||||| || || ||||| | ||||||||| Sbjct 10688 ACCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAA 10747 Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973 || |||||||| || ||||||||||||||||| || ||| ||||||| || || || Sbjct 10748 TGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGA 10807 Query 21974 TATCCCCAAGGGCATAGCA 21992 || || | |||||| || Sbjct 10808 GATTCCTAGAGGCATACCA 10826 >seq198484 Length=6561 Score = 96.9 bits (106), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 6373 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 6314 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || || |||||||| || || || | || | | | | | | |||| Sbjct 6313 GCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 6254 Query 21591 TGGTTAAAGTTGAAACCATTCAA 21613 ||||| || ||||||||||| || Sbjct 6253 TGGTTGAAATTGAAACCATTTAA 6231 >seq198258 Length=3934 Score = 93.3 bits (102), Expect = 1e-14 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 21854 ACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913 ||| ||||||||| || | | || || ||||| || || ||||| | ||||||||| Sbjct 3280 ACCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAA 3221 Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973 || || | ||| |||||||||||||||| ||| || | || | ||||||| || | || Sbjct 3220 TGGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGA 3161 Query 21974 TATCCCCAAGGGCATAGCATCAG--AAAAAGAG 22004 ||| |||| ||||| || ||| ||| |||| Sbjct 3160 TATTCCCATAGGCATCCCACCAGTCAAATAGAG 3128 >seq198688 Length=13710 Score = 82.4 bits (90), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 21705 TTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTG 21764 || || |||||||||| |||||| | || |||||||| || |||||||| | |||||| Sbjct 12845 TTGAAACTAGCATATTAGAAGATCAATCGGCCAAAATAACCATGAGCAGCTATAATATTA 12904 Query 21765 TAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 |||| | |||||||||||||| ||||||| Sbjct 12905 CAAGTTT--TCCTCTTGACCAAATCTGTAACC 12934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145860403547340