Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 239 1e-58
seq197127 120 9e-23
seq197706 114 4e-21
seq200167 102 2e-17
seq198484 96.9 1e-15
seq198258 93.3 1e-14
seq198688 82.4 2e-11
>seq198569
Length=8129
Score = 239 bits (264), Expect = 1e-58
Identities = 339/477 (71%), Gaps = 16/477 (3%)
Strand=Plus/Minus
Query 21675 GCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGA 21734
|| || || ||||| | | ||| || || || || ||||||||||||||||| | ||
Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158
Query 21735 CCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794
|||||||| || |||||||| |||||||| ||||| || |||||||||||||| ||||
Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098
Query 21795 CCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTA 21854
|| | || | || || || | || || | | |||| | |
Sbjct 3097 CCTTCATTAGCGGG----------GTGGTTTCCCTGATTAG-----AAGCTACCAAGGAA 3053
Query 21855 CCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGT-GAAA 21913
|| ||||||||| ||| | | || | ||||| || || ||||| | ||| | ||||
Sbjct 3052 CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAAA 2993
Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973
|| |||||||| |||||||||||||||||||| || | |||| ||||||| || || ||
Sbjct 2992 TGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAGA 2933
Query 21974 TATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACAC 22033
|| || | ||||| ||||||||||| || || |||| ||||| | | ||| ||
Sbjct 2932 GATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAAC 2873
Query 22034 AGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAG 22093
|||||| ||||| || |||||||| || || |||||| ||||| || | ||| || |
Sbjct 2872 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAA 2813
Query 22094 TCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTG 22150
|| | |||||||||||||| || ||||| ||| | || |||| | ||||||
Sbjct 2812 ACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTG 2756
>seq197127
Length=16832
Score = 120 bits (132), Expect = 9e-23
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 21888 ACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAAC 21947
|| || || ||||| | ||||||||| || |||||||| ||||||||||||||||||||
Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741
Query 21948 ACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCC 22007
|| | |||| ||||||| || || || || || | ||||| ||||||||||| ||
Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801
Query 22008 TGTCCAAACGGATAAACAAGGAACACAGCAG 22038
|| |||| ||||| | | ||| |||||||
Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGCAG 16832
>seq197706
Length=393
Score = 114 bits (126), Expect = 4e-21
Identities = 184/264 (70%), Gaps = 3/264 (1%)
Strand=Plus/Minus
Query 22111 ACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATG 22170
|||| || ||||| ||| | || |||| | |||||| | || | || | | |
Sbjct 393 ACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 334
Query 22171 GACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTA 22230
||||||| ||||| | ||||||||||| | ||||||||||| || ||||| ||||| |
Sbjct 333 GACCGCCATTGTATAACCATTCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCA 274
Query 22231 GTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACA 22290
|| || || | | |||| | ||| ||||| || || ||||| ||||| | |
Sbjct 273 AGCCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTA 214
Query 22291 GGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGG 22350
| || |||| || ||||| || || ||||| || || || || || || ||| ||||
Sbjct 213 GAGACCCAGAAACAGGTTCACGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGG 154
Query 22351 CGATAATAAA---ACAAGTTGTAG 22371
|||||||||| | |||||| ||
Sbjct 153 CGATAATAAATACAGAAGTTGCAG 130
>seq200167
Length=15642
Score = 102 bits (112), Expect = 2e-17
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 21854 ACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913
||| ||||||| | ||||| ||||||||||| || || ||||| | |||||||||
Sbjct 10688 ACCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAA 10747
Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973
|| |||||||| || ||||||||||||||||| || ||| ||||||| || || ||
Sbjct 10748 TGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGA 10807
Query 21974 TATCCCCAAGGGCATAGCA 21992
|| || | |||||| ||
Sbjct 10808 GATTCCTAGAGGCATACCA 10826
>seq198484
Length=6561
Score = 96.9 bits (106), Expect = 1e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || |||||||| || || | ||||||||
Sbjct 6373 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 6314
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| || || |||||||| || || || | || | | | | | | ||||
Sbjct 6313 GCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 6254
Query 21591 TGGTTAAAGTTGAAACCATTCAA 21613
||||| || ||||||||||| ||
Sbjct 6253 TGGTTGAAATTGAAACCATTTAA 6231
>seq198258
Length=3934
Score = 93.3 bits (102), Expect = 1e-14
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 21854 ACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913
||| ||||||||| || | | || || ||||| || || ||||| | |||||||||
Sbjct 3280 ACCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAA 3221
Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973
|| || | ||| |||||||||||||||| ||| || | || | ||||||| || | ||
Sbjct 3220 TGGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAAGTACTAGA 3161
Query 21974 TATCCCCAAGGGCATAGCATCAG--AAAAAGAG 22004
||| |||| ||||| || ||| ||| ||||
Sbjct 3160 TATTCCCATAGGCATCCCACCAGTCAAATAGAG 3128
>seq198688
Length=13710
Score = 82.4 bits (90), Expect = 2e-11
Identities = 74/92 (80%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 21705 TTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTG 21764
|| || |||||||||| |||||| | || |||||||| || |||||||| | ||||||
Sbjct 12845 TTGAAACTAGCATATTAGAAGATCAATCGGCCAAAATAACCATGAGCAGCTATAATATTA 12904
Query 21765 TAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796
|||| | |||||||||||||| |||||||
Sbjct 12905 CAAGTTT--TCCTCTTGACCAAATCTGTAACC 12934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145860403547340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |