Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq189432 147 3e-30
seq181835 120 4e-22
seq190564 89.7 6e-13
seq180626 84.2 3e-11
seq169593 84.2 3e-11
>seq189432
Length=7906
Score = 147 bits (162), Expect = 3e-30
Identities = 287/420 (68%), Gaps = 8/420 (2%)
Strand=Plus/Minus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| | ||||| ||||| ||| | || ||||| | || ||||||| |||||
Sbjct 769 GAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGTGCCCGTATCCCT 710
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
||| | ||||| | |||| ||||| || ||||||||||| || ||| || ||
Sbjct 709 AAAGGAGTGCTTCTTGTGGGTCCCCCAGGAACCGGAAAGACCCTTCTGGCCAAGGCAATT 650
Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408
|| || ||| || || || || || || | || | | | | |||||||||||||
Sbjct 649 GCTGGAGAAGCAGGAGTTCCTTTTTTCTCCATT--TCAGGCTCCGAGTTTGTGGAGATGT 592
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
|||||||||| |||||| || || || ||||| || ||| ||| || ||| |
Sbjct 591 TTGTTGGTGTTGGTGCCTCCAGAGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAATGCTC 532
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526
| || |||||||| ||||||| |||||||| || || |||| | | |||| | |
Sbjct 531 CTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGAACTGGAATCG 472
Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586
| | | ||||||||| ||||| || || ||||||| ||| | || || ||||||||
Sbjct 471 GAGG--TGGAAATGACGAAAGAGAGCAGACCCTTAATCAGCTATTGACAGAAATGGATGG 414
Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
||||| | || || || | || ||||| || |||||||| | ||||| || ||
Sbjct 413 GTTTGAAGGAAACACGGGTATCATTGTAATTGCAGCGACTAATCGTGCAGATATTCTGGA 354
>seq181835
Length=5898
Score = 120 bits (132), Expect = 4e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGG 75187
|||||| ||| | || ||||||||| ||||||||||||||| | || || | || ||
Sbjct 2636 GGGACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCATACCTGTTAAAGG 2695
Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247
|| |||| | | |||||| ||||| ||||||| ||| | || || || || |||
Sbjct 2696 -TCCATGGGAAGGTTGTGGAAAGGCCACAACACATGTTAATGAGAGTTGCCATAGGGATC 2754
Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307
|| ||| || |||||||| || | |||| || || ||||||||| | ||||
Sbjct 2755 CATAAGGATGATATTGATTCAGTAATTCAGACGTATCACTTGATGTCCCAGAGATGGTTC 2814
Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355
| ||| ||| | || || || ||||||||||| |||||||| || |||
Sbjct 2815 ACTCATGCATCGCCCACACTTTTCAATGCTGGCACACCAAGGCCCCAG 2862
>seq190564
Length=8368
Score = 89.7 bits (98), Expect = 6e-13
Identities = 188/281 (67%), Gaps = 12/281 (4%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|||||||| || || ||||| | || || || | ||||| || | ||| || |||
Sbjct 5786 CCAGGTACTGGGAAAACCCTTTTGGCTCGGGCAGTGGCGGGAGAGGCCGGTGTGCCGTTC 5727
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
| ||| | || | | || |||||| ||||||| |||||||| || ||||||
Sbjct 5726 TTTTCCTGCGCCGCGTCGGAGTTCGTGGAGTTGTTTGTGGGTGTGGGGGCGTCTAGGGTT 5667
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
|| ||| | ||||| | || ||| || || ||||| || || |||||||||
Sbjct 5666 CGAGATTTGTTTGAGAAGGCGAAGTCAAAGGCGCCTTGCATTGTGTTTATAGATGAGATT 5607
Query 175495 GATGCGGTGGGCAAGCAACGCAGCGC------TGGTGGTATGCCAGCAAATGACGAGAGA 175548
|||||||| || | ||| | | || ||||||| | ||||| |||||
Sbjct 5606 GATGCGGTTGGGAGACAAAGAGGGGCGGGGCTTGGTGGT------GGGAATGATGAGAGG 5553
Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589
||||| || |||||||| || | || || |||||||| ||
Sbjct 5552 GAACAGACTATTAATCAGCTGTTAACGGAAATGGATGGTTT 5512
>seq180626
Length=5659
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186
|| |||| || | || |||||||||| ||||||||||||||| ||| || | | |
Sbjct 2269 CGTGACTTCGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGATCCTACCTGTTGAAG 2328
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | | |||| || || ||||||| ||| |||| | | || ||
Sbjct 2329 G-TCCAAGGAAAAGTTGTTGAAAGGCCTCAACACATGTTGATGAGGGTTTCTGTTGGGAT 2387
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|||| ||| || |||||||||| | |||| || | |||||| || | |||
Sbjct 2388 CCACAAGGATGATATTGATTCTGCTATCAAGACCTATCATTTGATGTCTCAGAGATGGTT 2447
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|| ||| ||| | || ||||| |||||||| || ||||||| || ||
Sbjct 2448 CACTCATGCATCGCCTACCCTTTTCAATGCAGGGGCACCAAGGCCCCA 2495
>seq169593
Length=4175
Score = 84.2 bits (92), Expect = 3e-11
Identities = 244/368 (66%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 175226 TTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTG-GAAGTGGTGCCAAG 175284
|| ||||||| || || ||||| ||| ||||| ||| | |||| | ||||| | ||||
Sbjct 699 TTCAAGAGATAGTTGAGTTTCT-AAG-AACCCCAGAAAAATTTGCTGCAGTGGGGGCAAG 642
Query 175285 -ATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCG 175343
|| || ||| | || || | || |||||||| || ||||| || || |||
Sbjct 641 GATTCCAAAAGGAGTGCTACTAGTTGGACCACCAGGTACTGGTAAGACACTGCTGGCCAA 582
Query 175344 AGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGG 175402
||||| || || ||| | ||| || ||| || || | ||| | || | || | |
Sbjct 581 GGCCATTGCTGGAGAAGCCGGTGTGCCTTTCTTCTCACT-CTCCGGTTCAGAGTTCATTG 523
Query 175403 AGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAA 175462
|||||||||| || || || || ||| || | || | || | | || | ||
Sbjct 522 AGATGTTTGTGGGAGTCGGAGCTTCAAGAGTGAGGGACTTATTCAACAAGGCAAAGGCAA 463
Query 175463 ATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTG 175522
|| || || | || |||||||||||||| ||||| || || | ||| | | | |
Sbjct 462 ATTCGCCGTGCTTGGTTTTCATTGATGAGATAGATGCTGTCGGGAGGCAGAGAGGGACCG 403
Query 175523 GTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGG 175582
|| | | || ||||| ||||| || |||||| |||| || || || || || ||||
Sbjct 402 GTATTGGGGGAGGGAATGATGAGAGGGAGCAAACACTTAACCAGCTGCTGACTGAAATGG 343
Query 175583 ATGGCTTT 175590
|||| |||
Sbjct 342 ATGGGTTT 335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595076662204640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |