Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq189432 147 3e-30 seq181835 120 4e-22 seq190564 89.7 6e-13 seq180626 84.2 3e-11 seq169593 84.2 3e-11 >seq189432 Length=7906 Score = 147 bits (162), Expect = 3e-30 Identities = 287/420 (68%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | || ||||| | || ||||||| ||||| Sbjct 769 GAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGTGCCCGTATCCCT 710 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | |||| ||||| || ||||||||||| || ||| || || Sbjct 709 AAAGGAGTGCTTCTTGTGGGTCCCCCAGGAACCGGAAAGACCCTTCTGGCCAAGGCAATT 650 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || || ||| || || || || || || | || | | | | ||||||||||||| Sbjct 649 GCTGGAGAAGCAGGAGTTCCTTTTTTCTCCATT--TCAGGCTCCGAGTTTGTGGAGATGT 592 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| |||||| || || || ||||| || ||| ||| || ||| | Sbjct 591 TTGTTGGTGTTGGTGCCTCCAGAGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAATGCTC 532 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || |||||||| ||||||| |||||||| || || |||| | | |||| | | Sbjct 531 CTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGAACTGGAATCG 472 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | | ||||||||| ||||| || || ||||||| ||| | || || |||||||| Sbjct 471 GAGG--TGGAAATGACGAAAGAGAGCAGACCCTTAATCAGCTATTGACAGAAATGGATGG 414 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||||| | || || || | || ||||| || |||||||| | ||||| || || Sbjct 413 GTTTGAAGGAAACACGGGTATCATTGTAATTGCAGCGACTAATCGTGCAGATATTCTGGA 354 >seq181835 Length=5898 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGG 75187 |||||| ||| | || ||||||||| ||||||||||||||| | || || | || || Sbjct 2636 GGGACTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCATACCTGTTAAAGG 2695 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || |||| | | |||||| ||||| ||||||| ||| | || || || || ||| Sbjct 2696 -TCCATGGGAAGGTTGTGGAAAGGCCACAACACATGTTAATGAGAGTTGCCATAGGGATC 2754 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 || ||| || |||||||| || | |||| || || ||||||||| | |||| Sbjct 2755 CATAAGGATGATATTGATTCAGTAATTCAGACGTATCACTTGATGTCCCAGAGATGGTTC 2814 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| ||| | || || || ||||||||||| |||||||| || ||| Sbjct 2815 ACTCATGCATCGCCCACACTTTTCAATGCTGGCACACCAAGGCCCCAG 2862 >seq190564 Length=8368 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/281 (67%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || || ||||| | || || || | ||||| || | ||| || ||| Sbjct 5786 CCAGGTACTGGGAAAACCCTTTTGGCTCGGGCAGTGGCGGGAGAGGCCGGTGTGCCGTTC 5727 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| | || | | || |||||| ||||||| |||||||| || |||||| Sbjct 5726 TTTTCCTGCGCCGCGTCGGAGTTCGTGGAGTTGTTTGTGGGTGTGGGGGCGTCTAGGGTT 5667 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||| | ||||| | || ||| || || ||||| || || ||||||||| Sbjct 5666 CGAGATTTGTTTGAGAAGGCGAAGTCAAAGGCGCCTTGCATTGTGTTTATAGATGAGATT 5607 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGC------TGGTGGTATGCCAGCAAATGACGAGAGA 175548 |||||||| || | ||| | | || ||||||| | ||||| ||||| Sbjct 5606 GATGCGGTTGGGAGACAAAGAGGGGCGGGGCTTGGTGGT------GGGAATGATGAGAGG 5553 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||||| || |||||||| || | || || |||||||| || Sbjct 5552 GAACAGACTATTAATCAGCTGTTAACGGAAATGGATGGTTT 5512 >seq180626 Length=5659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| || | || |||||||||| ||||||||||||||| ||| || | | | Sbjct 2269 CGTGACTTCGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGATCCTACCTGTTGAAG 2328 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || || ||||||| ||| |||| | | || || Sbjct 2329 G-TCCAAGGAAAAGTTGTTGAAAGGCCTCAACACATGTTGATGAGGGTTTCTGTTGGGAT 2387 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| || |||||||||| | |||| || | |||||| || | ||| Sbjct 2388 CCACAAGGATGATATTGATTCTGCTATCAAGACCTATCATTTGATGTCTCAGAGATGGTT 2447 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| ||| | || ||||| |||||||| || ||||||| || || Sbjct 2448 CACTCATGCATCGCCTACCCTTTTCAATGCAGGGGCACCAAGGCCCCA 2495 >seq169593 Length=4175 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/368 (66%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 175226 TTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTG-GAAGTGGTGCCAAG 175284 || ||||||| || || ||||| ||| ||||| ||| | |||| | ||||| | |||| Sbjct 699 TTCAAGAGATAGTTGAGTTTCT-AAG-AACCCCAGAAAAATTTGCTGCAGTGGGGGCAAG 642 Query 175285 -ATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCG 175343 || || ||| | || || | || |||||||| || ||||| || || ||| Sbjct 641 GATTCCAAAAGGAGTGCTACTAGTTGGACCACCAGGTACTGGTAAGACACTGCTGGCCAA 582 Query 175344 AGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGG 175402 ||||| || || ||| | ||| || ||| || || | ||| | || | || | | Sbjct 581 GGCCATTGCTGGAGAAGCCGGTGTGCCTTTCTTCTCACT-CTCCGGTTCAGAGTTCATTG 523 Query 175403 AGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAA 175462 |||||||||| || || || || ||| || | || | || | | || | || Sbjct 522 AGATGTTTGTGGGAGTCGGAGCTTCAAGAGTGAGGGACTTATTCAACAAGGCAAAGGCAA 463 Query 175463 ATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTG 175522 || || || | || |||||||||||||| ||||| || || | ||| | | | | Sbjct 462 ATTCGCCGTGCTTGGTTTTCATTGATGAGATAGATGCTGTCGGGAGGCAGAGAGGGACCG 403 Query 175523 GTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGG 175582 || | | || ||||| ||||| || |||||| |||| || || || || || |||| Sbjct 402 GTATTGGGGGAGGGAATGATGAGAGGGAGCAAACACTTAACCAGCTGCTGACTGAAATGG 343 Query 175583 ATGGCTTT 175590 |||| ||| Sbjct 342 ATGGGTTT 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595076662204640