Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 241 2e-58
seq197706 140 4e-28
seq200167 134 2e-26
seq197127 129 7e-25
seq198258 105 8e-18
>seq198569
Length=8129
Score = 241 bits (266), Expect = 2e-58
Identities = 327/452 (72%), Gaps = 18/452 (4%)
Strand=Plus/Minus
Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179
|||||| |||| | ||||| |||||||| |||| ||||| || ||||||||||| ||||
Sbjct 3191 GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 3133
Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239
||||||| || || || ||||||||||| | || || | || | |
Sbjct 3132 TATTATAAGTTTCCTCCTCTTGACCAAATCTGTACCCTTCATTAGCGGG----------G 3083
Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299
| || || ||||||||| || | || || ||||| ||||||||| |||| || || |
Sbjct 3082 TGGTTTCCCTGATTAGA--AGCT---ACCAAGGAACCATGCATAGCATTGAATAGAGAGC 3028
Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAA-GGATGCATAAGAATGTTATGCTCT 8358
| | || | ||| ||||| ||| ||||| |||| || |||||||| || || |||||
Sbjct 3027 CGTCCAATACACCAGCTACACCTAACATATCGAAATGGGTGCATAAGGATATTGTGCTCA 2968
Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418
|| |||||||||| ||||||||| || |||||||| || ||||||||||| ||||||||
Sbjct 2967 GCCTGGAATACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAA 2908
Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478
|| || ||||||| |||||| | ||||| || || |||||| | || |||||
Sbjct 2907 AAACTTCCTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 2848
Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTA 8538
|||||| ||| ||||| |||| |||||| || ||| | | ||||||| | |
Sbjct 2847 GAATATGCAACAGCAATCCAAGGTCGCATACCCAAACGGAAACTAAGTTCCCACTCACGA 2788
Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTG 8570
||||| ||| || | |||| | ||||||
Sbjct 2787 CCCATATAACAAGCTACACCAAGTAAGAAGTG 2756
>seq197706
Length=393
Score = 140 bits (154), Expect = 4e-28
Identities = 228/330 (69%), Gaps = 9/330 (3%)
Strand=Plus/Minus
Query 8538 ACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597
|||||| ||| || | |||| | |||||| | | || | || ||| ||||| ||
Sbjct 386 ACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCC 327
Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657
|| || ||||| ||||| | | ||||||||||| || || || ||||| || || ||
Sbjct 326 ATTGTATAACCATTCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCAAGCCTAT 267
Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717
||| |||| |||| | ||||| ||||| || ||||| ||||| | | || ||
Sbjct 266 AGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTAGAGACCC 207
Query 8718 TGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGAT 8777
| |||||||||||||||||| || |||||||| || ||||||||||| || || | ||
Sbjct 206 AGAAACAGGTTCACGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGGCGATAAT 147
Query 8778 AAAGCAAGTAGCAGCAGCTAACAAG---------CAAGGAATCATTAGAACTCCAAACCA 8828
||| || || |||| ||| | | ||| ||||| | ||| ||| ||||
Sbjct 146 AAATACAGAAGTTGCAGTTAATAGGGTGGGGTCCGTAGGGATCATCAAAACACCATACCA 87
Query 8829 ACCGACATAAAGTCTGTTGTTTGTACTTGT 8858
|| | ||||| | ||| || || || ||
Sbjct 86 TCCAATGTAAAGACAGTTTTTAGTGCTAGT 57
>seq200167
Length=15642
Score = 134 bits (148), Expect = 2e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 8269 AAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATA 8328
|||||||| ||||||| |||||| || || ||||| || | ||| ||||| ||| |||
Sbjct 10683 AAAGAACCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATG 10742
Query 8329 TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTA 8388
|| || || |||||||| ||||| ||||| || ||||||||| ||| ||||| || |||
Sbjct 10743 TGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTA 10802
Query 8389 CCAGAAATACCTAGAGGCATTCCA 8412
||||| || ||||||||||| |||
Sbjct 10803 CCAGAGATTCCTAGAGGCATACCA 10826
>seq197127
Length=16832
Score = 129 bits (142), Expect = 7e-25
Identities = 122/155 (79%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361
||||||| || ||||| ||| ||| || || || |||||||| || || ||||| ||
Sbjct 16678 CCGAACA--CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCC 16735
Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421
|||||||||| ||||||||| || |||||||| || ||||||||||| |||||||| ||
Sbjct 16736 TGGAATACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAA 16795
Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGC 8456
|| ||||||| |||||| | ||||| || ||
Sbjct 16796 CTTCCTTGACCAATTGGATAGATCAAGAAAACAGC 16830
>seq198258
Length=3934
Score = 105 bits (116), Expect = 8e-18
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 8266 ACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCC 8325
|| || ||||| ||||||||||| || || || || ||||| | ||| ||||| ||| |
Sbjct 3288 ACAAAGGAACCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAAC 3229
Query 8326 ATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAAC 8385
|| || || || || | ||| || || ||||| || | |||||||| || |||||| ||
Sbjct 3228 ATGTGAAATGGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAA 3169
Query 8386 GTACCAGAAATACCTAGAGGCATTCCATCAG 8416
|||| ||| || || | |||||| ||| |||
Sbjct 3168 GTACTAGATATTCCCATAGGCATCCCACCAG 3138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 614321181249160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |