Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq198569 241 2e-58 seq197706 140 4e-28 seq200167 134 2e-26 seq197127 129 7e-25 seq198258 105 8e-18 >seq198569 Length=8129 Score = 241 bits (266), Expect = 2e-58 Identities = 327/452 (72%), Gaps = 18/452 (4%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| ||||| || ||||||||||| |||| Sbjct 3191 GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 3133 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 ||||||| || || || ||||||||||| | || || | || | | Sbjct 3132 TATTATAAGTTTCCTCCTCTTGACCAAATCTGTACCCTTCATTAGCGGG----------G 3083 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | || || ||||||||| || | || || ||||| ||||||||| |||| || || | Sbjct 3082 TGGTTTCCCTGATTAGA--AGCT---ACCAAGGAACCATGCATAGCATTGAATAGAGAGC 3028 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAA-GGATGCATAAGAATGTTATGCTCT 8358 | | || | ||| ||||| ||| ||||| |||| || |||||||| || || ||||| Sbjct 3027 CGTCCAATACACCAGCTACACCTAACATATCGAAATGGGTGCATAAGGATATTGTGCTCA 2968 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||||| ||||||||| || |||||||| || ||||||||||| |||||||| Sbjct 2967 GCCTGGAATACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAA 2908 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || || ||||||| |||||| | ||||| || || |||||| | || ||||| Sbjct 2907 AAACTTCCTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 2848 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTA 8538 |||||| ||| ||||| |||| |||||| || ||| | | ||||||| | | Sbjct 2847 GAATATGCAACAGCAATCCAAGGTCGCATACCCAAACGGAAACTAAGTTCCCACTCACGA 2788 Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTG 8570 ||||| ||| || | |||| | |||||| Sbjct 2787 CCCATATAACAAGCTACACCAAGTAAGAAGTG 2756 >seq197706 Length=393 Score = 140 bits (154), Expect = 4e-28 Identities = 228/330 (69%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 8538 ACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597 |||||| ||| || | |||| | |||||| | | || | || ||| ||||| || Sbjct 386 ACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCC 327 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || || ||||| ||||| | | ||||||||||| || || || ||||| || || || Sbjct 326 ATTGTATAACCATTCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCAAGCCTAT 267 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 ||| |||| |||| | ||||| ||||| || ||||| ||||| | | || || Sbjct 266 AGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTAGAGACCC 207 Query 8718 TGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGAT 8777 | |||||||||||||||||| || |||||||| || ||||||||||| || || | || Sbjct 206 AGAAACAGGTTCACGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGGCGATAAT 147 Query 8778 AAAGCAAGTAGCAGCAGCTAACAAG---------CAAGGAATCATTAGAACTCCAAACCA 8828 ||| || || |||| ||| | | ||| ||||| | ||| ||| |||| Sbjct 146 AAATACAGAAGTTGCAGTTAATAGGGTGGGGTCCGTAGGGATCATCAAAACACCATACCA 87 Query 8829 ACCGACATAAAGTCTGTTGTTTGTACTTGT 8858 || | ||||| | ||| || || || || Sbjct 86 TCCAATGTAAAGACAGTTTTTAGTGCTAGT 57 >seq200167 Length=15642 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 8269 AAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATA 8328 |||||||| ||||||| |||||| || || ||||| || | ||| ||||| ||| ||| Sbjct 10683 AAAGAACCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATG 10742 Query 8329 TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTA 8388 || || || |||||||| ||||| ||||| || ||||||||| ||| ||||| || ||| Sbjct 10743 TGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTA 10802 Query 8389 CCAGAAATACCTAGAGGCATTCCA 8412 ||||| || ||||||||||| ||| Sbjct 10803 CCAGAGATTCCTAGAGGCATACCA 10826 >seq197127 Length=16832 Score = 129 bits (142), Expect = 7e-25 Identities = 122/155 (79%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||||| || ||||| ||| ||| || || || |||||||| || || ||||| || Sbjct 16678 CCGAACA--CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCC 16735 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 |||||||||| ||||||||| || |||||||| || ||||||||||| |||||||| || Sbjct 16736 TGGAATACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAA 16795 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGC 8456 || ||||||| |||||| | ||||| || || Sbjct 16796 CTTCCTTGACCAATTGGATAGATCAAGAAAACAGC 16830 >seq198258 Length=3934 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 8266 ACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCC 8325 || || ||||| ||||||||||| || || || || ||||| | ||| ||||| ||| | Sbjct 3288 ACAAAGGAACCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAAC 3229 Query 8326 ATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAAC 8385 || || || || || | ||| || || ||||| || | |||||||| || |||||| || Sbjct 3228 ATGTGAAATGGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAA 3169 Query 8386 GTACCAGAAATACCTAGAGGCATTCCATCAG 8416 |||| ||| || || | |||||| ||| ||| Sbjct 3168 GTACTAGATATTCCCATAGGCATCCCACCAG 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614321181249160