Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 239 1e-58
seq197127 120 9e-23
seq197706 114 4e-21
seq200167 102 2e-17
seq198484 96.9 1e-15
seq198258 93.3 1e-14
seq198688 82.4 2e-11
>seq198569
Length=8129
Score = 239 bits (264), Expect = 1e-58
Identities = 339/477 (71%), Gaps = 16/477 (3%)
Strand=Plus/Plus
Query 41537 CACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 41596
|||||| | |||| || | ||| ||||| || |||||||||||||| | || |
Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815
Query 41597 GGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTG 41656
|| ||| | || ||||| |||||| || || |||||||| || ||||| ||||||||
Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875
Query 41657 TTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCC 41716
||| | | ||||| |||| || || ||||||||||| ||||| | || || ||
Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935
Query 41717 GGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTT 41776
|| || ||||||| |||| | || |||||||||||||||||||| |||||||| || |||
Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995
Query 41777 C-ACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAG 41835
| | ||| | ||||| || || ||||| | || | | ||| ||||||||| |||
Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055
Query 41836 CCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTA 41895
| |||| | | || || | || || || | || | || ||
Sbjct 3056 CTTGGTAGCTT-----CTAATCAGGGAAACCAC----------CCCGCTAATGAAGGGTA 3100
Query 41896 CAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCG 41955
|| |||||||||||||| || ||||| |||||||| |||||||| || |||||||| ||
Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160
Query 41956 GCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012
| ||||||||||||||||| || || || || ||| | | ||||| || || ||
Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq197127
Length=16832
Score = 120 bits (132), Expect = 9e-23
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 41649 CTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGG 41708
||||||| ||| | | ||||| |||| || || ||||||||||| ||||| | |
Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773
Query 41709 GGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGC 41768
| || || || || ||||||| |||| | || |||||||||||||||||||| |||||||
Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713
Query 41769 ATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799
| || ||||||||| | ||||| || || ||
Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682
>seq197706
Length=393
Score = 114 bits (126), Expect = 4e-21
Identities = 184/264 (70%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 41316 CTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAA 41372
|| |||||| | |||||||||||||| ||| || || || || || || ||||| |
Sbjct 130 CTGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTA 189
Query 41373 TCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCG 41432
| || ||||| || |||| || || | ||||| ||||| || || ||||| ||| |
Sbjct 190 TTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTA 249
Query 41433 TTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTG 41492
|||| | | || || || | ||||| ||||| || ||||||||||| | |||
Sbjct 250 TTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTG 309
Query 41493 ATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCG 41552
|||||||| | ||||| |||||||| | | || | || | |||||| | |||| |
Sbjct 310 ATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 369
Query 41553 TCTTTGCTTACATGGGACGAGAGT 41576
| | ||| ||||| || ||||
Sbjct 370 TAGCTTGTTATATGGGTCGTGAGT 393
>seq200167
Length=15642
Score = 102 bits (112), Expect = 2e-17
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 41695 TGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCA 41754
|| |||||| | || || || || || ||||||| ||| || ||||||||||||||
Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767
Query 41755 CAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTT 41814
||| || |||||||| || ||||||||| | ||||| || || ||||||||||| |
Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707
Query 41815 GTTCTCTGCTATGCACGGT 41833
|||| | ||||||| |||
Sbjct 10706 GTTCAGTACTATGCATGGT 10688
>seq198484
Length=6561
Score = 96.9 bits (106), Expect = 1e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 42074 TTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACC 42133
|| ||||||||||| || ||||||||| | | | | | | || | || || || |||
Sbjct 6231 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACC 6290
Query 42134 TGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCA 42193
||||| || || |||||||||| |||||||| | || || |||||||| || || ||
Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350
Query 42194 CACAACTTCCCGCTTGACCTTGC 42216
|| |||||||| || ||||| ||
Sbjct 6351 CATAACTTCCCTCTAGACCTAGC 6373
>seq198258
Length=3934
Score = 93.3 bits (102), Expect = 1e-14
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 41683 CTCTTTTT--CTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTG 41740
|||| ||| ||| || ||||| |||| ||||| | || ||||||| | || | ||
Sbjct 3128 CTCTATTTGACTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTA 3187
Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800
||| |||||||||||||||| ||| | || || ||||||||| | ||||| || || |||
Sbjct 3188 TTCTAGGCTGAGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3247
Query 41801 TTTGGTGGGAGTTTGTTCTCTGCTATGCACGGT 41833
|| || || | | || ||||||||| |||
Sbjct 3248 TTCGGCGGCTCTCTATTTAGTGCTATGCATGGT 3280
>seq198688
Length=13710
Score = 82.4 bits (90), Expect = 2e-11
Identities = 74/92 (80%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| |||||||||||||| | |||| |||||| | |||||||| || ||||||
Sbjct 12934 GGTTACAGATTTGGTCAAGAGGA--AAACTTGTAATATTATAGCTGCTCATGGTTATTTT 12877
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAA 41982
|| || | |||||| |||||||||| || ||
Sbjct 12876 GGCCGATTGATCTTCTAATATGCTAGTTTCAA 12845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145866788331912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |