Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq198569 239 1e-58 seq197127 120 9e-23 seq197706 114 4e-21 seq200167 102 2e-17 seq198484 96.9 1e-15 seq198258 93.3 1e-14 seq198688 82.4 2e-11 >seq198569 Length=8129 Score = 239 bits (264), Expect = 1e-58 Identities = 339/477 (71%), Gaps = 16/477 (3%) Strand=Plus/Plus Query 41537 CACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 41596 |||||| | |||| || | ||| ||||| || |||||||||||||| | || | Sbjct 2756 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTG 2815 Query 41597 GGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTG 41656 || ||| | || ||||| |||||| || || |||||||| || ||||| |||||||| Sbjct 2816 GGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2875 Query 41657 TTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCC 41716 ||| | | ||||| |||| || || ||||||||||| ||||| | || || || Sbjct 2876 TTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCT 2935 Query 41717 GGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTT 41776 || || ||||||| |||| | || |||||||||||||||||||| |||||||| || ||| Sbjct 2936 GGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTT 2995 Query 41777 C-ACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAG 41835 | | ||| | ||||| || || ||||| | || | | ||| ||||||||| ||| Sbjct 2996 CGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC 3055 Query 41836 CCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTA 41895 | |||| | | || || | || || || | || | || || Sbjct 3056 CTTGGTAGCTT-----CTAATCAGGGAAACCAC----------CCCGCTAATGAAGGGTA 3100 Query 41896 CAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCG 41955 || |||||||||||||| || ||||| |||||||| |||||||| || |||||||| || Sbjct 3101 CAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 3160 Query 41956 GCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 | ||||||||||||||||| || || || || ||| | | ||||| || || || Sbjct 3161 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq197127 Length=16832 Score = 120 bits (132), Expect = 9e-23 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41649 CTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGG 41708 ||||||| ||| | | ||||| |||| || || ||||||||||| ||||| | | Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773 Query 41709 GGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGC 41768 | || || || || ||||||| |||| | || |||||||||||||||||||| ||||||| Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713 Query 41769 ATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 | || ||||||||| | ||||| || || || Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq197706 Length=393 Score = 114 bits (126), Expect = 4e-21 Identities = 184/264 (70%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 41316 CTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAA 41372 || |||||| | |||||||||||||| ||| || || || || || || ||||| | Sbjct 130 CTGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTA 189 Query 41373 TCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCG 41432 | || ||||| || |||| || || | ||||| ||||| || || ||||| ||| | Sbjct 190 TTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTA 249 Query 41433 TTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTG 41492 |||| | | || || || | ||||| ||||| || ||||||||||| | ||| Sbjct 250 TTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTG 309 Query 41493 ATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCG 41552 |||||||| | ||||| |||||||| | | || | || | |||||| | |||| | Sbjct 310 ATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 369 Query 41553 TCTTTGCTTACATGGGACGAGAGT 41576 | | ||| ||||| || |||| Sbjct 370 TAGCTTGTTATATGGGTCGTGAGT 393 >seq200167 Length=15642 Score = 102 bits (112), Expect = 2e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 41695 TGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCA 41754 || |||||| | || || || || || ||||||| ||| || |||||||||||||| Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 41755 CAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTT 41814 ||| || |||||||| || ||||||||| | ||||| || || ||||||||||| | Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 41815 GTTCTCTGCTATGCACGGT 41833 |||| | ||||||| ||| Sbjct 10706 GTTCAGTACTATGCATGGT 10688 >seq198484 Length=6561 Score = 96.9 bits (106), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42074 TTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACC 42133 || ||||||||||| || ||||||||| | | | | | | || | || || || ||| Sbjct 6231 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACC 6290 Query 42134 TGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCA 42193 ||||| || || |||||||||| |||||||| | || || |||||||| || || || Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350 Query 42194 CACAACTTCCCGCTTGACCTTGC 42216 || |||||||| || ||||| || Sbjct 6351 CATAACTTCCCTCTAGACCTAGC 6373 >seq198258 Length=3934 Score = 93.3 bits (102), Expect = 1e-14 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 41683 CTCTTTTT--CTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTG 41740 |||| ||| ||| || ||||| |||| ||||| | || ||||||| | || | || Sbjct 3128 CTCTATTTGACTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTA 3187 Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800 ||| |||||||||||||||| ||| | || || ||||||||| | ||||| || || ||| Sbjct 3188 TTCTAGGCTGAGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3247 Query 41801 TTTGGTGGGAGTTTGTTCTCTGCTATGCACGGT 41833 || || || | | || ||||||||| ||| Sbjct 3248 TTCGGCGGCTCTCTATTTAGTGCTATGCATGGT 3280 >seq198688 Length=13710 Score = 82.4 bits (90), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| |||||||||||||| | |||| |||||| | |||||||| || |||||| Sbjct 12934 GGTTACAGATTTGGTCAAGAGGA--AAACTTGTAATATTATAGCTGCTCATGGTTATTTT 12877 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAA 41982 || || | |||||| |||||||||| || || Sbjct 12876 GGCCGATTGATCTTCTAATATGCTAGTTTCAA 12845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145866788331912