Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq198569 228 2e-55 seq197706 168 2e-37 seq197127 123 7e-24 seq200167 116 1e-21 seq197886 104 7e-18 seq198484 91.5 4e-14 seq198258 80.6 8e-11 seq180125 80.6 8e-11 >seq198569 Length=8129 Score = 228 bits (252), Expect = 2e-55 Identities = 323/450 (72%), Gaps = 18/450 (4%) Strand=Plus/Plus Query 42620 TGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTT 42679 |||| || || ||||||||| | ||| | || ||| | || ||||| |||||| | Sbjct 2784 TGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTTGCAT 2843 Query 42680 ACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTT 42739 | || || ||||| || || || ||||| || ||| | |||||||| |||| ||||| Sbjct 2844 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAA 2903 Query 42740 CTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCC 42799 |||||| ||||| |||||||| || || || ||||| |||||||||||| | || |||| Sbjct 2904 GTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTATTCC 2963 Query 42800 AGGCTGAACATAACATTCTTATGCATCC-TTTCCATATGCTTGGTGTTGCCGGCGTATTT 42858 ||||||| || || || |||||||| || |||| ||||| | ||||| || || ||||| Sbjct 2964 AGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGTATTG 3023 Query 42859 GGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAA 42918 | || || | ||| |||||||||||| |||| | || ||| | | ||| Sbjct 3024 GACGGCTCTCTATTCAATGCTATGCATGGT-TCCTTGGTAGCT----TCTAATCAGGGAA 3078 Query 42919 ACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTAT 42978 || || | ||| | || |||| || |||||||||||||| |||||| Sbjct 3079 ACCAC----------CCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAACTTAT 3128 Query 42979 AACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AA 43037 || ||||| || || |||||||| ||||| || | |||||||||||||| | |||| || Sbjct 3129 AATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAA 3187 Query 43038 TAATAGTCGCTCTTTGCACTTCTTTCTTGC 43067 || ||| ||||| || || || || || Sbjct 3188 CAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq197706 Length=393 Score = 168 bits (186), Expect = 2e-37 Identities = 228/314 (73%), Gaps = 9/314 (3%) Strand=Plus/Plus Query 42293 GTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGA 42352 ||||||| | ||| ||||| ||| ||||||| |||| |||| |||||| |||||| Sbjct 46 GTAACTGAATAACTAGCACTAAAAACTGTCTTTACATTGGATGGTATGGTGTTTTGATGA 105 Query 42353 TTCC--CTGTCTGCTCGCTGCTACC----AC--CTGT-TTTATTGTCGCTTTCATTGCTG 42403 | || | | | | | || || | || |||| |||||| |||| |||||||||| Sbjct 106 TCCCTACGGACCCCACCCTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATTGCTG 165 Query 42404 CCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCA 42463 | ||||| || || |||||||| |||||||||||||| ||||| ||||| || ||||| | Sbjct 166 CTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGA 225 Query 42464 ACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATT 42523 |||| || ||||| |||||| | | |||| | || || || | || || || Sbjct 226 ACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACC 285 Query 42524 CGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCG 42583 |||| |||||||| || |||| |||||| | ||||||||||| |||||| |||| Sbjct 286 CGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAA 345 Query 42584 TCGTGTTCCACTTC 42597 | || | |||||| Sbjct 346 TTGTTCTACACTTC 359 >seq197127 Length=16832 Score = 123 bits (136), Expect = 7e-24 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 42704 CTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTG 42763 |||| || ||| | |||||||| |||| ||||| |||||| ||||| |||||||| | Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773 Query 42764 GCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGC 42823 | || || ||||| |||||||||||| | || ||||||||||| || || || ||||||| Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713 Query 42824 ATCCTTTCCATATGCTTGGTGTTGCCGGCGT 42854 | || || || ||| | ||||| || || || Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq200167 Length=15642 Score = 116 bits (128), Expect = 1e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 42750 TGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACA 42809 ||| |||||||| || || || ||||| |||||||| ||| || ||||||||||| || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 42810 TAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTT 42869 ||||| |||||||| || || || ||| | ||||| || || ||||||||||| || | Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 42870 GTTCTCAGCTATGCATGGT 42888 |||| ||||||||||| Sbjct 10706 GTTCAGTACTATGCATGGT 10688 >seq197886 Length=1258 Score = 104 bits (114), Expect = 7e-18 Identities = 186/271 (69%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 43004 TTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTC 43063 |||| || | ||||||||||||| | ||||||||| || | ||| || ||||| | Sbjct 332 TTGGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCC 391 Query 43064 TTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGT 43123 | | | |||||| || | || || | ||||| | | | || | || | |||| Sbjct 392 TAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTG 451 Query 43124 TTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCC 43183 | ||| | |||||||| || || |||||||| | ||||||||||| || ||| || Sbjct 452 TCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTA 511 Query 43184 CTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGG------CTTTGAGGTGATGCACG 43237 |||||||||||||| | || | ||| ||| |||| ||| || || || | Sbjct 512 AGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGT-ATTCATG 570 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCT 43268 | || ||||| ||||||||||| || || || Sbjct 571 AACGTAATGCTCATAACTTCCCTCTAGACCT 601 >seq198484 Length=6561 Score = 91.5 bits (100), Expect = 4e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 43129 TTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACT 43188 || |||||||| || || |||||||| | ||||||| ||| | ||| || ||| Sbjct 6231 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACC 6290 Query 43189 TGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCA 43248 ||||| ||||| | || ||||| |||||||| | || || ||||| || || ||||| Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350 Query 43249 CATAACTTCCCGCTTGATCTTGC 43271 ||||||||||| || || || || Sbjct 6351 CATAACTTCCCTCTAGACCTAGC 6373 >seq198258 Length=3934 Score = 80.6 bits (88), Expect = 8e-11 Identities = 101/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 42750 TGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACA 42809 ||| |||||| | || || || |||| ||||||||| || | || ||| ||||||| || Sbjct 3142 TGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCA 3201 Query 42810 TAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTT 42869 || || ||| | || || || || ||| | ||||| || || ||||| || || || | Sbjct 3202 CAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCT 3261 Query 42870 GTTCTCAGCTATGCATGGT 42888 || |||||||||||| Sbjct 3262 ATTTAGTGCTATGCATGGT 3280 >seq180125 Length=5570 Score = 80.6 bits (88), Expect = 8e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 42922 ACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAAC 42981 || ||||| ||| | ||| | || |||| |||||||||||||| | |||| |||| Sbjct 895 ACAGAAAATGAATCCGCTAATGAAGGTTACAGATTCGGTCAAGAGGAATAAACTTCTAAC 954 Query 42982 ATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGC 43028 || | ||||| |||||||| ||||| || | |||||||||||||| Sbjct 955 ATCATAGCAGCTCATGGTTATTTTGGCCGCTTGATCTTCCAATATGC 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143191563596244