Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq198569 212 2e-50 seq197127 131 5e-26 seq197706 127 6e-25 seq200167 109 2e-19 seq198484 98.7 3e-16 seq198248 80.6 8e-11 seq197886 80.6 8e-11 seq197639 80.6 8e-11 >seq198569 Length=8129 Score = 212 bits (234), Expect = 2e-50 Identities = 334/477 (70%), Gaps = 16/477 (3%) Strand=Plus/Minus Query 26081 GCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTC 26140 || || || ||||| | |||||| ||| || ||||| ||||| || || || |||| Sbjct 3217 GCTAGGAAAAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGG 3158 Query 26141 CCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAG 26200 ||||| || || || ||||| ||||||||||| || || || ||||| ||||| | || Sbjct 3157 CCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCCTCCTCTTGACCAAATCTGTAC 3098 Query 26201 CCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTT 26260 || | ||| | | | || ||||| || || ||| ||||| Sbjct 3097 CCTTCATTA-GCGGG---------GTGGTTTCCCTGATTAG-----AAGCTACCAAGGAA 3053 Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAA- 26319 || ||||||||| ||| |||| || | || || ||||| ||||| ||||| ||| Sbjct 3052 CCATGCATAGCATTGAATAGAGAGCCGTCCAATACACCAGCTACACCTAACATATCGAAA 2993 Query 26320 TGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGA 26379 ||||||||| || ||||| || || || |||||||||| ||| ||||| ||||||||||| Sbjct 2992 TGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACGATCATGAAGTTGAAAGTACCAGA 2933 Query 26380 GATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACAC 26439 ||| || |||||||| |||||| |||||| ||||| || | ||||| | ||||| || Sbjct 2932 GATTCCTAGAGGCATCCCATCAGAAAAACTTCCTTGACCAATTGGATAGATCAAGAAAAC 2873 Query 26440 TGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAG 26499 || ||| || | | || |||| |||||||||| ||||| |||| ||| || | Sbjct 2872 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAA 2813 Query 26500 TCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTG 26556 | | || |||||||||| | || ||| ||||| || | ||||||||| Sbjct 2812 ACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTG 2756 >seq197127 Length=16832 Score = 131 bits (144), Expect = 5e-26 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 ||| ||||| ||||| ||| || ||||||||||| || ||||| || || || ||||| Sbjct 16681 AACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAA 16740 Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412 ||||| ||| ||||| |||||||||||||| || |||||||| |||||| |||||| || Sbjct 16741 TACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCC 16800 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGC 26442 ||| || | ||||| | ||||| || || Sbjct 16801 TTGACCAATTGGATAGATCAAGAAAACAGC 16830 >seq197706 Length=393 Score = 127 bits (140), Expect = 6e-25 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 373 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 314 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | |||||||||| ||||||||||| || | || || || ||| | Sbjct 313 TCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCAAGCCTATAGCTGCAGAAGTA 254 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || ||||| || |||||||| || || | || || || ||||| || ||| Sbjct 253 GGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTAGAGACCCAGAAACAGGTTCA 194 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 || || ||||| ||||| || || || || || |||||||| | ||||| Sbjct 193 CGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGGCGATAATAAA 144 >seq200167 Length=15642 Score = 109 bits (120), Expect = 2e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || ||||||| | ||| || | ||||| || || ||||| ||||| ||| || ||| Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 |||||||| || || || || || || ||||||||| ||| ||||| |||||||||||| Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808 Query 26381 ATACCAAGAGGCATTCCA 26398 || || |||||||| ||| Sbjct 10809 ATTCCTAGAGGCATACCA 10826 >seq198484 Length=6561 Score = 98.7 bits (108), Expect = 3e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 6373 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 6314 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||| ||||| ||| |||| || | | ||| ||||| || Sbjct 6313 GCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 6254 Query 25997 TGGTTAAAGTTAAAACCATTTA 26018 ||||| || || |||||||||| Sbjct 6253 TGGTTGAAATTGAAACCATTTA 6232 >seq198248 Length=3867 Score = 80.6 bits (88), Expect = 8e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| ||||| || ||||| || || ||||||||||| || || ||||| |||| |||||| Sbjct 284 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTGATACC 343 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAA 26092 | || || | ||| || || || || ||||||| ||| || || ||| Sbjct 344 TAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAAAAA 392 >seq197886 Length=1258 Score = 80.6 bits (88), Expect = 8e-11 Identities = 181/272 (67%), Gaps = 5/272 (2%) Strand=Plus/Minus Query 25878 CTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATA-----ACTTCAAAGCCGAG 25932 ||| ||| || || ||||||||||||||||| || || ||| |||| || | Sbjct 603 CTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGAATACTCCAACTTTCGTACCAAA 544 Query 25933 GTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTAC 25992 |||||| |||| | | ||||||||| || |||| || | | ||| ||||| Sbjct 543 GTTAGCATGGTTAATGATATCAGCCCAAGTCTTAATTACACGACCTTGATTATCAACTAC 484 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 || ||||| || || |||||||||||||| | |||| || ||||| | | | Sbjct 483 GGATTGGTTGAAATTCAAACCATTTAGGTTGACAGCCACAACGCTAATACCTAAAACAAT 424 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | | | || || | || |||||| || || |||||||| | | || | ||||| Sbjct 423 GAACTAGATACCTATTACAGGCCAAACAGTTAGGAAGAAATGTAAAAAATGAGAATTATT 364 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAA 26144 |||| | |||| || || || |||| |||| Sbjct 363 AAAAGTAACATATTGGAAGATCAATCGGCCAA 332 >seq197639 Length=228 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 110 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 169 Query 25937 GCTCGGTTTAATACATCAGCCCATGTA 25963 || ||||| | | ||| ||||| ||| Sbjct 170 GCACGGTTAATGATATCGGCCCAGGTA 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147360827921760