Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq198569 264 1e-65 seq197706 159 4e-34 seq197127 138 1e-27 seq200167 129 7e-25 seq198258 114 2e-20 seq198484 104 3e-17 seq197639 87.8 2e-12 >seq198569 Length=8129 Score = 264 bits (292), Expect = 1e-65 Identities = 313/423 (74%), Gaps = 16/423 (4%) Strand=Plus/Plus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || |||| | || ||||| |||||||| ||||||||| Sbjct 2786 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTTGCATAT 2845 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || || || | ||||| ||||| ||| | | ||||| | |||||||| | Sbjct 2846 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGT 2905 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| ||||||||| || |||||||||||||| |||| ||| |||| ||||| Sbjct 2906 TTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAG 2965 Query 155482 GCAGAACACAATATCCTTATGCACCC-CTTCCACATGCTTGGAGTAGCAGGTGTGTTCGG 155540 || || |||||||||||||||||||| ||| | ||| | || ||||| ||||| || | Sbjct 2966 GCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGTATTGGA 3025 Query 155541 TGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAAC 155600 || ||||| ||| ||||||||| ||||| ||||| | ||| |||||| | ||||| Sbjct 3026 CGGCTCTCTATTCAATGCTATGCATGGTTCCTTGGT---AGCTT--CTAATCAGGGAAAC 3080 Query 155601 TACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAA 155660 || || || | || |||| || || ||||| || ||||||||||| Sbjct 3081 CACCCCGC----------TAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAACTTATAA 3130 Query 155661 CATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAA 155720 ||||| ||||||||||| || || || || | |||||||| ||||| |||||||| Sbjct 3131 TATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 3190 Query 155721 CTC 155723 ||| Sbjct 3191 CTC 3193 >seq197706 Length=393 Score = 159 bits (176), Expect = 4e-34 Identities = 151/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||||||||||||||| ||||| || || |||||||||||||||||||| || Sbjct 144 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTT 203 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| ||| || | ||||| ||||| || ||||| ||||| || | |||| ||| Sbjct 204 TCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 263 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || || | ||||| || || || |||||||| ||| | ||||||| ||||| ||| Sbjct 264 GCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATAC 323 Query 155242 AATGGTGGTCCTT 155254 ||||| ||||||| Sbjct 324 AATGGCGGTCCTT 336 >seq197127 Length=16832 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 155386 GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGT 155445 ||||| ||| | | ||||| | |||||||| ||| ||||||| ||||||||| || Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 |||||||||||||| |||| ||| |||| ||||| || || |||||||||||||||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGT 155534 || || |||||| | || ||||| ||||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq200167 Length=15642 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 155434 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAAT 155493 |||||||| || |||||||||||||| |||| ||| ||| ||||| || || ||||| Sbjct 10822 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCACAAC 10763 Query 155494 ATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTC 155553 |||||||||||||| || |||||| | || ||||| ||||| || ||||| || || ||| Sbjct 10762 ATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTGTTC 10703 Query 155554 TCTGCTATGCACGGTTCATTG 155574 | ||||||| ||||| ||| Sbjct 10702 AGTACTATGCATGGTTCTTTG 10682 >seq198258 Length=3934 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 155426 CTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAG 155485 ||| || ||||||| | || || ||| ||||||| |||| || |||| ||| | || | Sbjct 3138 CTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTG 3197 Query 155486 AACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGAT 155545 | |||||||||||| | ||||| || |||||| | || ||||| ||||| ||||| || | Sbjct 3198 AGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCT 3257 Query 155546 CTCTTTTCTCTGCTATGCACGGTTCATTGGT 155576 |||| || ||||||||| ||||| || || Sbjct 3258 CTCTATTTAGTGCTATGCATGGTTCCTTTGT 3288 >seq198484 Length=6561 Score = 104 bits (114), Expect = 3e-17 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 155812 AACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACA 155868 || |||||||| |||||||| |||||||| || |||| || || || ||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACC 6290 Query 155869 TGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCT 155928 ||||| || || ||||||| ||| |||||||||||||| ||||| || ||||| ||| Sbjct 6291 TGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 6350 Query 155929 CACAACTTCCCTCTTGACCTTGCTGCT 155955 || ||||||||||| ||||| || ||| Sbjct 6351 CATAACTTCCCTCTAGACCTAGCGGCT 6377 >seq197639 Length=228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 155865 TACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924 ||| ||||| || || ||||||| ||| |||||||||||||| ||||| || ||||| Sbjct 196 TACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 137 Query 155925 CGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||| ||||||||||| ||||| || ||| Sbjct 136 TGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583371627980680