Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq198569 192 2e-44 seq197706 131 5e-26 seq197127 116 1e-21 seq200167 100 8e-17 seq198484 82.4 2e-11 >seq198569 Length=8129 Score = 192 bits (212), Expect = 2e-44 Identities = 324/461 (70%), Gaps = 16/461 (3%) Strand=Plus/Minus Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || || | || ||||| ||||| || |||||||| || Sbjct 3190 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 3131 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 |||||||| || | || |||||||| | ||||| ||| ||| || ||| Sbjct 3130 TTATAAGTTTCCTCCTCTTGACCAAATCTGTACCC----TTC----ATT-AGCGGG-GTG 3081 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || |||| ||||| || | || ||||| || ||||||||| || | || || Sbjct 3080 GTTTCCC---TGATT-AGAAGCTACCAAGGAA-CCATGCATAGCATTGAATAGAGAGCCG 3026 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAA-TGGGTGCATGAGAATGTTGTGTTCTGC 41002 | || || || || || || | ||||| ||| ||||||||| || || ||||| || || Sbjct 3025 TCCAATACACCAGCTACACCTAACATATCGAAATGGGTGCATAAGGATATTGTGCTCAGC 2966 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| || | |||||||||||| || ||| |||||||| |||||| |||||||| || Sbjct 2965 CTGGAATACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAA 2906 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | |||||| | ||||| ||||| ||| |||| | ||||||| Sbjct 2905 ACTTCCTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 2846 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| |||| |||||| | | | | ||||||||||| | ||| Sbjct 2845 ATATGCAACAGCAATCCAAGGTCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 2786 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGA 41223 || ||||| || | ||| ||||| | |||| || Sbjct 2785 CATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAAAGA 2745 >seq197706 Length=393 Score = 131 bits (144), Expect = 5e-26 Identities = 227/329 (69%), Gaps = 11/329 (3%) Strand=Plus/Minus Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||||||| ||| Sbjct 373 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 314 Query 41253 TCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTC 41312 || || | | | |||||||| || ||||| || || | || || || ||| | Sbjct 313 TCATCAACGGATGCAGCTTCCCATATCGGGTAAAAGTGCAAGCCTATAGCTGCAGAAGTA 254 Query 41313 GGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCA 41372 |||| | || || || |||||||||||||| || | || || || ||||| || ||| Sbjct 253 GGAATAATGGCACCTGAGATAATATTGTTCCCATAAAGTAGAGACCCAGAAACAGGTTCA 194 Query 41373 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGT 41431 || || ||||| ||||| || || || || || || |||||||| || || ||| | || Sbjct 193 CGAATACCATCAATATCGACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGT 135 Query 41432 AGCAGTTAGTA---------ATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||||||| || | || ||||| | |||||| |||| || | ||| || Sbjct 134 TGCAGTTAATAGGGTGGGGTCCGTAGGGATCATCAAAACACCATACCATCCAATGTAAAG 75 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTAC 41511 | ||| | |||||||| | ||||||| Sbjct 74 ACAGTTTTTAGTGCTAGTTATTCAGTTAC 46 >seq197127 Length=16832 Score = 116 bits (128), Expect = 1e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 40950 ACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAG 41009 || || || || || | ||| || ||||||||||| || || ||||| || || ||||| Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 41010 ACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCC 41069 || | |||||||||||| || ||| |||||||| |||||| |||||||| ||| || Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 41070 TGACCGAATGGATAAACTAAGAATACAGC 41098 ||||| | |||||| | ||||| ||||| Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGC 16830 >seq200167 Length=15642 Score = 100 bits (110), Expect = 8e-17 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||| | |||| | |||||||| || || || || || | ||| || ||| Sbjct 10689 CCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTGAAAT 10748 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||||||| || |||||||| || || ||||| || ||| |||||||| || ||| | Sbjct 10749 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACCAGAG 10808 Query 41037 ATTCCTAAAGGCATACCA 41054 ||||||| |||||||||| Sbjct 10809 ATTCCTAGAGGCATACCA 10826 >seq198484 Length=6561 Score = 82.4 bits (90), Expect = 2e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 |||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || | Sbjct 6373 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 6314 Query 40593 TGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGAC 40652 | ||||| | ||| ||||| ||| ||| || || | | || ||||| || Sbjct 6313 GCACGGTTAATGATATCGGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 6254 Query 40653 TGGTTAAAGTTAAAACCATT 40672 ||||| || || |||||||| Sbjct 6253 TGGTTGAAATTGAAACCATT 6234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143360760387402