Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq198569 277 2e-69 seq197127 143 3e-29 seq200167 141 1e-28 seq198258 127 2e-24 seq198484 100 3e-16 seq197886 87.8 2e-12 seq198248 86.0 7e-12 seq197639 84.2 2e-11 >seq198569 Length=8129 Score = 277 bits (306), Expect = 2e-69 Identities = 316/423 (75%), Gaps = 16/423 (4%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| ||||||||||| || || || || ||||||||||| ||| Sbjct 3193 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACA 3134 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| || || ||||| || || |||| || | || || Sbjct 3133 ATATTATAAGTTTCCTCCTCTTGACCAAATCTGTACCCTTCATTA----------GCGGG 3084 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| ||| | || |||| ||||| ||||||||| | || || || Sbjct 3083 GTGGTTTCCCTGATTAGA----AGCTACCAAG-GAACCATGCATAGCATTGAATAGAGAG 3029 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAA-TGGGTGCATAAGGATGTTGTGCTC 67828 || | |||||||| ||||| || | ||||| ||| ||||||||||||||| |||||||| Sbjct 3028 CCGTCCAATACACCAGCTACACCTAACATATCGAAATGGGTGCATAAGGATATTGTGCTC 2969 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 || ||||| |||| |||| |||| ||||||||||| || || |||||||| | ||||| Sbjct 2968 AGCCTGGAATACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGA 2909 Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948 ||| |||||||| | ||||||| |||||| ||||| || || | || ||||| Sbjct 2908 AAAACTTCCTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 2849 Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACG 68008 || ||||| ||| |||||||| |||||||| | |||| || ||||||||||| ||| Sbjct 2848 TGAATATGCAACAGCAATCCAAGGTCGCATACCCAAACGGAAACTAAGTTCCCACTCACG 2789 Query 68009 ACC 68011 ||| Sbjct 2788 ACC 2786 >seq197127 Length=16832 Score = 143 bits (158), Expect = 3e-29 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 67779 ACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAAC 67838 ||||| ||||| || | ||| || ||||||||||||||||| |||||||| || ||||| Sbjct 16682 ACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAAT 16741 Query 67839 ACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCT 67898 |||| |||| |||| ||||||||||| || || |||||||| | ||||| ||| ||| Sbjct 16742 ACGATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATCCCATCAGAAAAACTTCCT 16801 Query 67899 TGACCGAAAGGATAGACCAAGAACACAGC 67927 ||||| | ||||||| |||||| ||||| Sbjct 16802 TGACCAATTGGATAGATCAAGAAAACAGC 16830 >seq200167 Length=15642 Score = 141 bits (156), Expect = 1e-28 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 67742 AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATG 67801 |||||| ||||||| ||| || || || ||||| |||||||| ||||| || | ||| || Sbjct 10685 AGAACCATGCATAGTACTGAACAGGGAGCCACCAAATACACCAGCTACACCTAACATGTG 10744 Query 67802 GAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 |||||||||||||||||||||||||| || ||||| ||| ||| |||| |||||||| Sbjct 10745 AAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGCTCATTAAGTTGAAAGTACC 10804 Query 67862 AGAAATACCAAGAGGCAT 67879 ||| || || |||||||| Sbjct 10805 AGAGATTCCTAGAGGCAT 10822 >seq198258 Length=3934 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 67737 ACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGC 67796 |||| ||||| |||||||||||||| || || || ||||||||||| ||||| || | | Sbjct 3288 ACAAAGGAACCATGCATAGCACTAAATAGAGAGCCGCCGAATACACCAGCTACACCTAAC 3229 Query 67797 ATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAA 67856 || || |||||||| | |||||| |||||||| || | ||| |||| || | |||| ||| Sbjct 3228 ATGTGAAATGGGTGAAAAAGGATATTGTGCTCAGCCTAGAATACGATCAAGAAGTTGAAA 3169 Query 67857 GTACCAGAAATACCAAGAGGCAT 67879 |||| ||| || || | |||||| Sbjct 3168 GTACTAGATATTCCCATAGGCAT 3146 >seq198484 Length=6561 Score = 100 bits (110), Expect = 3e-16 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 ||| || ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 6377 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 6318 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAAC 67474 || | ||||| ||| || ||||| ||| ||| || || ||| ||||| Sbjct 6317 GTTAGCACGGTTAATGATATCGGCCCAGGTATTAATTAC---ACGGCCTTGACTATCAAC 6261 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTT 67501 || ||||||||||| |||||||| || Sbjct 6260 TACAGATTGGTTGAAATTGAAACCATT 6234 >seq197886 Length=1258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/278 (67%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATA-----ACTTCCATT 67412 |||| | ||||| ||||||||||| ||||| ||||| || || ||| |||| | | Sbjct 608 AGCAACTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGAATACTCCAACTTTCGTA 549 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGT-- 67470 |||| || ||||| ||| || |||||||| ||| || || |||| | Sbjct 548 CCAAAGTTAGCATGGTTAATGATATCAGCCCAAGTCTTAATTAC---ACGACCTTGATTA 492 Query 67471 -CAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 |||| |||||||||||||| || ||||| || ||||||| |||| | | ||| Sbjct 491 TCAACTACGGATTGGTTGAAATTCAAACCATTTAGGTTGACAGCCACAACGCTAATACCT 432 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | || ||||| |||| | | ||||| | ||| |||||||| || | | Sbjct 431 AAAACAATGAACTAGATACCTATTACAGGCCAAACAGTTAGGAAGAAATGTAAAAAATGA 372 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACC 67627 || || || |||| |||| ||||||||||| || || Sbjct 371 GAATTATTAAAAGTAACATATTGGAAGATCAATCGGCC 334 >seq198248 Length=3867 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||||||||| |||||||| || || ||||| |||||||| | ||| Sbjct 285 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTGATACCT 344 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAA 67576 | |||||||||||||| | || ||||| | ||||| ||||| || Sbjct 345 AAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAAAA 391 >seq197639 Length=228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 ||| || ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 106 AGCCGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 165 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCAC 67456 || | ||||| ||| || ||||| ||| ||| || Sbjct 166 GTTAGCACGGTTAATGATATCGGCCCAGGTATTAATTAC 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565528393371480