Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 136 7e-27
seq156113 131 3e-25
seq181690 104 4e-17
seq176217 91.5 3e-13
>seq194543
Length=10949
Score = 136 bits (150), Expect = 7e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| ||||| | || ||||||||||| || | ||| || |||||||| ||
Sbjct 3711 ATCCCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCT 3652
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || | ||| || || || || ||||||||||| || | ||| ||||| |||
Sbjct 3651 GCTAGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGA 3592
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||||||||| ||||||| || | ||| |||||||| || |||
Sbjct 3591 GGAATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCG 3532
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | || || ||||| || || || ||||| || || ||||||||
Sbjct 3531 ACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482
Score = 104 bits (114), Expect = 4e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
|||||||| || | || || | ||| || || || || || |||||||| ||||||
Sbjct 3891 ATATTATAATCAGCTAGAGTCCGCCCATCTTCCAACTGCTTCCCAGCAAAAATCAATCTC 3832
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
||||||||||| || || || || ||||| ||||| || | || | ||| ||| |||
Sbjct 3831 TGTTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTCACATTGTCAATTGTA 3772
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
|| ||| ||| || || ||||| || || || || || | || || |||||||| |||
Sbjct 3771 TCAGAACTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGACAAATATCTGC 3712
Query 193359 AT 193360
||
Sbjct 3711 AT 3710
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|||||||| ||||| |||| | ||| ||||| ||||| |||||||| ||||| || ||
Sbjct 3171 TGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATC 3112
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | || ||||||||||| || || || || || || || |||||
Sbjct 3111 TTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCA 3052
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || |||||
Sbjct 3051 GTTAGGGTTTTCACGAAGATCTGCAT 3026
>seq156113
Length=3066
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| ||||| | || ||||||||||| || | ||| || || ||||| ||
Sbjct 1115 ATCCCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCC 1056
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || |||| ||| || ||||| || || || ||||| || | ||| ||||| |||
Sbjct 1055 GCTAGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGA 996
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || ||||| ||||||| |||| ||| ||||||||||| |||
Sbjct 995 GGAATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCG 936
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| | || || ||||| || ||||| ||||| || || || |||||
Sbjct 935 ACTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq181690
Length=5866
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
||||| ||||| | ||||| |||| ||| | || | ||| || ||||| || ||
Sbjct 3188 ATACCGCCTCTGAGACGAAGAACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCA 3247
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || || ||| || || ||||| || ||||| || | || || || || ||
Sbjct 3248 GCTAGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGG 3307
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || |||||||| || || | || | || ||| ||||| ||| |||
Sbjct 3308 GGGATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCC 3367
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| || || ||||| || ||||| ||||||||||||||
Sbjct 3368 ACCTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3417
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|||||||| ||||| || | || || || || || || || || || |||||||| ||
Sbjct 3044 TGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTATCTTGAATC 3103
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | || | || ||| ||||| ||| ||| ||||| || ||||| || || |||
Sbjct 3104 TTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACTTCAAGGGTTATGGTCTTCCCT 3163
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| ||||||||||||||
Sbjct 3164 GTGAGGGTTTTCACAAATATTTGCAT 3189
>seq176217
Length=4970
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || || |||| ||||| |||| |||| || | ||| || || || || ||
Sbjct 2289 ATGCCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCC 2348
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || || ||| || | |||||| || ||||| || | ||||| || || ||
Sbjct 2349 GCTAGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGG 2408
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| |||||||| || || | || | || ||| ||||||||| ||
Sbjct 2409 GGAATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCC 2468
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | ||| || || || || || || ||||| || |||||||||||
Sbjct 2469 ACCTCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897402981126960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |