Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq194543 134 2e-26 seq176217 102 1e-16 seq181690 84.2 3e-11 >seq194543 Length=10949 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | ||||| ||||| ||||| || |||||||| ||| Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| |||||||||||||| || |||||||| || Sbjct 3542 GATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCAG 3601 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| ||||||||||||| | |||||| | || || ||||||||||| Sbjct 3602 CAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATAAT 3661 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||||| | ||| | ||| | || || || || || Sbjct 3662 ATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 3708 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || |||||||| || || ||||| | || || || |||| Sbjct 3710 ATGCAGATATTTGTCAAGACTTTGACTGGGAAGACAATTACTCTGGAGGTGGAGAGTTCT 3769 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||| ||||| ||||| || || || || || || ||| Sbjct 3770 GATACAATTGACAATGTGAAGGCTAAGATACAGGATAAGGAGGGGATTCCGCCTGATCAA 3829 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || |||||| | |||||| | ||| || | ||||||||| Sbjct 3830 CAGAGATTGATTTTTGCTGGGAAGCAGTTGGAAGATGGGCGGACTCTAGCTGATTATAAT 3889 Query 156003 AT 156004 || Sbjct 3890 AT 3891 >seq176217 Length=4970 Score = 102 bits (112), Expect = 1e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || || |||| |||||||| || || ||||| |||||| ||| Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| ||| || || || || ||||| || || ||||| || Sbjct 2686 GACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2627 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| |||||| ||||| ||||| || | | || | | ||||| | Sbjct 2626 CAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACA-- 2569 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 ||||||||| || | || || ||||| ||| Sbjct 2568 ATATCCAAAAGGAATCCACCCTCCATTTGGTG 2537 >seq181690 Length=5866 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | || || || || || || | || || || ||| Sbjct 3417 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAGGTGGAGAGTTCG 3358 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || |||||||| || || || || ||||| || Sbjct 3357 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCCCCAGACCAG 3298 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| || || ||| | || ||| || || || | ||||| | Sbjct 3297 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACA-- 3240 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||||| ||| |||| |||||||| || | | | |||||||| Sbjct 3239 ATATCCAAAAGGAGTCGACCCTTCATTTGGTTCTTCGTCTCAGAGGCGG 3191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730040462874800