Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 134 2e-26
seq176217 102 1e-16
seq181690 84.2 3e-11
>seq194543
Length=10949
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| | ||||| ||||| ||||| || |||||||| |||
Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || || ||||| |||||||||||||| || |||||||| ||
Sbjct 3542 GATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCAG 3601
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||||| ||||||||||||| | |||||| | || || |||||||||||
Sbjct 3602 CAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATAAT 3661
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| || ||| ||||| | ||| | ||| | || || || || ||
Sbjct 3662 ATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 3708
Score = 113 bits (124), Expect = 7e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || || |||||||| || || ||||| | || || || ||||
Sbjct 3710 ATGCAGATATTTGTCAAGACTTTGACTGGGAAGACAATTACTCTGGAGGTGGAGAGTTCT 3769
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| ||| ||||| ||||| || || || || || || |||
Sbjct 3770 GATACAATTGACAATGTGAAGGCTAAGATACAGGATAAGGAGGGGATTCCGCCTGATCAA 3829
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||||| ||| || |||||| | |||||| | ||| || | |||||||||
Sbjct 3830 CAGAGATTGATTTTTGCTGGGAAGCAGTTGGAAGATGGGCGGACTCTAGCTGATTATAAT 3889
Query 156003 AT 156004
||
Sbjct 3890 AT 3891
>seq176217
Length=4970
Score = 102 bits (112), Expect = 1e-16
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||||||||| | || || |||| |||||||| || || ||||| |||||| |||
Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||| ||| ||| || || || || ||||| || || ||||| ||
Sbjct 2686 GACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2627
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| | |||| |||||| ||||| ||||| || | | || | | ||||| |
Sbjct 2626 CAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACA-- 2569
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032
||||||||| || | || || ||||| |||
Sbjct 2568 ATATCCAAAAGGAATCCACCCTCCATTTGGTG 2537
>seq181690
Length=5866
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| | ||||| | || || || || || || | || || || |||
Sbjct 3417 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAGGTGGAGAGTTCG 3358
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||||| || || || |||||||| || || || || ||||| ||
Sbjct 3357 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCCCCAGACCAG 3298
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| | || | ||| || || ||| | || ||| || || || | ||||| |
Sbjct 3297 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACA-- 3240
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
||||||||| ||| |||| |||||||| || | | | ||||||||
Sbjct 3239 ATATCCAAAAGGAGTCGACCCTTCATTTGGTTCTTCGTCTCAGAGGCGG 3191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 730040462874800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |