Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq194543 127 4e-24 seq156113 116 7e-21 seq181690 91.5 3e-13 seq188192 87.8 4e-12 seq176217 86.0 1e-11 seq162333 86.0 1e-11 >seq194543 Length=10949 Score = 127 bits (140), Expect = 4e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||||| || || || |||| ||||| || || |||||||| || ||||| Sbjct 3892 GATATTATAATCAGCTAGAGTCCGCCCATCTTCCAACTGCTTCCCAGCAAAAATCAATCT 3833 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||||||| || || || || ||||| ||||| ||| || ||||| || | Sbjct 3832 CTGTTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTCACATTGTCAATTGT 3773 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || |||||||| || || ||||| || || || | ||||||||| Sbjct 3772 ATCAGAACTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGACAAATATCTG 3713 Query 192534 CAT 192536 ||| Sbjct 3712 CAT 3710 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| || || | ||| || |||||||||||| | || || || |||| ||||| || Sbjct 3685 ATGCAACGTCGACTCCTTCTGGATATTATAATCTGCTAGGGTCCGCCCATCTTCCAACTG 3626 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 ||||| ||||| || || | ||| ||||| || || || |||||||||||||| ||||| Sbjct 3625 CTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGAATCCCTTCTTTATCTTGGATTTT 3566 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || |||||| |||| ||| || || ||||| | ||||| ||||| ||||| Sbjct 3565 GGCCTTGACATTATCGATAGTATCAGAGCTCTCGACTTCCAAGGTAATTGTTTTGCCAGT 3506 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | ||||| | || || ||||| Sbjct 3505 AAGGGTTTTGACGAAGATTTGCAT 3482 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 ||||| ||||||||||||| | ||| ||||| || || |||||||| ||||| || || Sbjct 3171 TGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATC 3112 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 || ||| || || |||| ||| || ||| || || || || || || |||||| Sbjct 3111 TTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCA 3052 Query 192511 GTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||||| | || |||||||| Sbjct 3051 GTTAGGGTTTTCACGAAGATCTGCAT 3026 >seq156113 Length=3066 Score = 116 bits (128), Expect = 7e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| ||| || ||| |||||||||| | || || |||| |||||||| || ||| Sbjct 1310 GTAGACTCCTTCTGGATGTTATAATCAGCCAGAGTCCGCCCATCTTCCAATTGCTTCCCA 1251 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 || || || || ||||| |||||||| || || || || ||||| ||||| ||| ||| Sbjct 1250 GCGAAAATCAACCTCTGCTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTT 1191 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| || | ||| || || || || |||||||| || || ||||| || || Sbjct 1190 ACATTGTCAATCGTATCAGAGCTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTC 1131 Query 192520 TTAATAAATATCTGCAT 192536 || | |||||||||||| Sbjct 1130 TTGACAAATATCTGCAT 1114 >seq181690 Length=5866 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || || || | || | ||| || || || || ||| Sbjct 2732 ATCCCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCA 2791 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || | | |||| ||||||||||| || |||||||| || ||||| ||||| || Sbjct 2792 GCTAAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGC 2851 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||||| || || | ||||| || Sbjct 2852 GGAATACCCTCCTTGTCCTGAATTTTTGCCTTTACGTTGTCAATTGTGTCTGAACTCTCC 2911 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || || || || || || || |||| ||| || ||||| Sbjct 2912 ACCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 >seq188192 Length=7493 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| ||||| | || || | ||| | || | ||| || ||| || || Sbjct 4784 ATAGTTCCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAG 4843 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | || ||||| |||| ||||||||||| |||||||| || |||||||||||||| Sbjct 4844 TCTGCTAGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCC 4903 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || || || ||||| || || || Sbjct 4904 GGCGGGATACCTTCCTTGTCCTG 4926 >seq176217 Length=4970 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || || || | || | ||| || ||| || ||||| Sbjct 2289 ATGCCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCC 2348 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | |||| |||| |||||| ||||||||||| | ||||| || || || Sbjct 2349 GCTAGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGG 2408 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || || ||| || | ||| || ||| Sbjct 2409 GGAATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCC 2468 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || || || | ||||| | ||||| ||||| Sbjct 2469 ACCTCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518 >seq162333 Length=3517 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || || | || |||||||| | || | ||| || ||| || || |||| Sbjct 3155 CCACCCCTGAGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 3096 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || |||||||| ||||| || || |||||||||||||||||||| Sbjct 3095 AGAGTCCGACCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGTGGA 3036 Query 192430 ATTCCTTCTTTATCTTG 192446 || ||||| || || || Sbjct 3035 ATGCCTTCCTTGTCCTG 3019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981954709429050