Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 127 4e-24
seq156113 116 7e-21
seq181690 91.5 3e-13
seq188192 87.8 4e-12
seq176217 86.0 1e-11
seq162333 86.0 1e-11
>seq194543
Length=10949
Score = 127 bits (140), Expect = 4e-24
Identities = 138/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||||||||||| || || || |||| ||||| || || |||||||| || |||||
Sbjct 3892 GATATTATAATCAGCTAGAGTCCGCCCATCTTCCAACTGCTTCCCAGCAAAAATCAATCT 3833
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
|||||||||||| || || || || ||||| ||||| ||| || ||||| || |
Sbjct 3832 CTGTTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTCACATTGTCAATTGT 3773
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || || || || |||||||| || || ||||| || || || | |||||||||
Sbjct 3772 ATCAGAACTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGACAAATATCTG 3713
Query 192534 CAT 192536
|||
Sbjct 3712 CAT 3710
Score = 111 bits (122), Expect = 3e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392
||| || || | ||| || |||||||||||| | || || || |||| ||||| ||
Sbjct 3685 ATGCAACGTCGACTCCTTCTGGATATTATAATCTGCTAGGGTCCGCCCATCTTCCAACTG 3626
Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452
||||| ||||| || || | ||| ||||| || || || |||||||||||||| |||||
Sbjct 3625 CTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGAATCCCTTCTTTATCTTGGATTTT 3566
Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512
|| |||||| |||| ||| || || ||||| | ||||| ||||| |||||
Sbjct 3565 GGCCTTGACATTATCGATAGTATCAGAGCTCTCGACTTCCAAGGTAATTGTTTTGCCAGT 3506
Query 192513 TAATGTTTTAATAAATATCTGCAT 192536
| ||||| | || || |||||
Sbjct 3505 AAGGGTTTTGACGAAGATTTGCAT 3482
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450
||||| ||||||||||||| | ||| ||||| || || |||||||| ||||| || ||
Sbjct 3171 TGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATC 3112
Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510
|| ||| || || |||| ||| || ||| || || || || || || ||||||
Sbjct 3111 TTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCA 3052
Query 192511 GTTAATGTTTTAATAAATATCTGCAT 192536
|||| ||||| | || ||||||||
Sbjct 3051 GTTAGGGTTTTCACGAAGATCTGCAT 3026
>seq156113
Length=3066
Score = 116 bits (128), Expect = 7e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399
|||| ||| || ||| |||||||||| | || || |||| |||||||| || |||
Sbjct 1310 GTAGACTCCTTCTGGATGTTATAATCAGCCAGAGTCCGCCCATCTTCCAATTGCTTCCCA 1251
Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459
|| || || || ||||| |||||||| || || || || ||||| ||||| ||| |||
Sbjct 1250 GCGAAAATCAACCTCTGCTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTT 1191
Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519
||||| || | ||| || || || || |||||||| || || ||||| || ||
Sbjct 1190 ACATTGTCAATCGTATCAGAGCTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTC 1131
Query 192520 TTAATAAATATCTGCAT 192536
|| | ||||||||||||
Sbjct 1130 TTGACAAATATCTGCAT 1114
>seq181690
Length=5866
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | |||||| | || || || | || | ||| || || || || |||
Sbjct 2732 ATCCCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCA 2791
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| ||| || | | |||| ||||||||||| || |||||||| || ||||| ||||| ||
Sbjct 2792 GCTAAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGC 2851
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || || || || ||||| ||||| || || | ||||| ||
Sbjct 2852 GGAATACCCTCCTTGTCCTGAATTTTTGCCTTTACGTTGTCAATTGTGTCTGAACTCTCC 2911
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||| || || || || || || || |||| ||| || |||||
Sbjct 2912 ACCTCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961
>seq188192
Length=7493
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363
||| | ||||| ||||| | || || | ||| | || | ||| || ||| || ||
Sbjct 4784 ATAGTTCCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAG 4843
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
|| | || ||||| |||| ||||||||||| |||||||| || ||||||||||||||
Sbjct 4844 TCTGCTAGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCC 4903
Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446
|| || || ||||| || || ||
Sbjct 4904 GGCGGGATACCTTCCTTGTCCTG 4926
>seq176217
Length=4970
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || || || ||||| | || || || | || | ||| || ||| || |||||
Sbjct 2289 ATGCCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCC 2348
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || | |||| |||| |||||| ||||||||||| | ||||| || || ||
Sbjct 2349 GCTAGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGG 2408
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| |||||||| || || || || ||| || | ||| || |||
Sbjct 2409 GGAATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCC 2468
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||| ||||| || || || | ||||| | ||||| |||||
Sbjct 2469 ACCTCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518
>seq162333
Length=3517
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| || || | || |||||||| | || | ||| || ||| || || ||||
Sbjct 3155 CCACCCCTGAGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 3096
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| || || |||| || |||||||| ||||| || || ||||||||||||||||||||
Sbjct 3095 AGAGTCCGACCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGTGGA 3036
Query 192430 ATTCCTTCTTTATCTTG 192446
|| ||||| || || ||
Sbjct 3035 ATGCCTTCCTTGTCCTG 3019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981954709429050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |