Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq194543 116 7e-21 seq156113 104 4e-17 seq188192 91.5 3e-13 seq155647 91.5 3e-13 >seq194543 Length=10949 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | || || || | || ||||| || || ||||||||||| |||||| Sbjct 3891 ATATTATAATCAGCTAGAGTCCGCCCATCTTCCAACTGCTTCCCAGCAAAAATCAATCTC 3832 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| ||||| || || || || ||||| ||||| ||| || ||||| || ||| Sbjct 3831 TGTTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTCACATTGTCAATTGTA 3772 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || |||||||| || || ||||| || || || | ||||||||| Sbjct 3771 TCAGAACTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGACAAATATCTGC 3712 Query 172068 AT 172069 || Sbjct 3711 AT 3710 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||| || | || | || ||||| || ||||| |||||||| || | | Sbjct 3663 ATATTATAATCTGCTAGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGC 3604 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || |||||||||||||| ||||| || |||||| |||||| Sbjct 3603 TGCTGATCTGGAGGAATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTA 3544 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||| | ||||| ||||| ||||| | ||||| | ||| || ||| Sbjct 3543 TCAGAGCTCTCGACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGC 3484 Query 172068 AT 172069 || Sbjct 3483 AT 3482 >seq156113 Length=3066 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | | || || | || |||||||| || ||||| ||||| || ||| Sbjct 1295 ATGTTATAATCAGCCAGAGTCCGCCCATCTTCCAATTGCTTCCCAGCGAAAATCAACCTC 1236 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || || || || ||||| ||||| ||| |||||||| || ||| Sbjct 1235 TGCTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTTACATTGTCAATCGTA 1176 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || |||||||| || || ||||| || || || | ||||||||| Sbjct 1175 TCAGAGCTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGACAAATATCTGC 1116 Query 172068 AT 172069 || Sbjct 1115 AT 1114 >seq188192 Length=7493 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| ||||||| || || | ||| | || | ||| || || || | Sbjct 4782 TCATAGTTCCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGT 4841 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 | |||| || || ||| | || ||||||||||| ||||||||||| ||||||||||| | Sbjct 4842 AGTCTGCTAGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGAT 4901 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 | || || || ||||| || || || Sbjct 4902 CCGGCGGGATACCTTCCTTGTCCTG 4926 >seq155647 Length=3035 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||||| ||||| || || | | || ||||| ||||| || ||||| | Sbjct 2166 CGTCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCT 2107 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || ||| || ||||| || || || || ||||| || || ||||| | Sbjct 2106 TGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTA 2047 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| ||||| |||| ||||| | ||| ||||||||||| Sbjct 2046 TGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902870863217400