Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 116 7e-21
seq156113 104 4e-17
seq188192 91.5 3e-13
seq155647 91.5 3e-13
>seq194543
Length=10949
Score = 116 bits (128), Expect = 7e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
||||||||||| | || || || | || ||||| || || ||||||||||| ||||||
Sbjct 3891 ATATTATAATCAGCTAGAGTCCGCCCATCTTCCAACTGCTTCCCAGCAAAAATCAATCTC 3832
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||| ||||| || || || || ||||| ||||| ||| || ||||| || |||
Sbjct 3831 TGTTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTCACATTGTCAATTGTA 3772
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || || || || |||||||| || || ||||| || || || | |||||||||
Sbjct 3771 TCAGAACTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGACAAATATCTGC 3712
Query 172068 AT 172069
||
Sbjct 3711 AT 3710
Score = 113 bits (124), Expect = 8e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
||||||||||||| || | || | || ||||| || ||||| |||||||| || | |
Sbjct 3663 ATATTATAATCTGCTAGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGC 3604
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| || || || || || |||||||||||||| ||||| || |||||| ||||||
Sbjct 3603 TGCTGATCTGGAGGAATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTA 3544
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || || ||||| | ||||| ||||| ||||| | ||||| | ||| || |||
Sbjct 3543 TCAGAGCTCTCGACTTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGC 3484
Query 172068 AT 172069
||
Sbjct 3483 AT 3482
>seq156113
Length=3066
Score = 104 bits (114), Expect = 4e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| |||||||| | | || || | || |||||||| || ||||| ||||| || |||
Sbjct 1295 ATGTTATAATCAGCCAGAGTCCGCCCATCTTCCAATTGCTTCCCAGCGAAAATCAACCTC 1236
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| || ||||| || || || || ||||| ||||| ||| |||||||| || |||
Sbjct 1235 TGCTGATCAGGCGGAATCCCCTCCTTATCCTGTATCTTAGCCTTTACATTGTCAATCGTA 1176
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || || || || |||||||| || || ||||| || || || | |||||||||
Sbjct 1175 TCAGAGCTCTCCACCTCCAGAGTAATTGTCTTCCCAGTCAAAGTCTTGACAAATATCTGC 1116
Query 172068 AT 172069
||
Sbjct 1115 AT 1114
>seq188192
Length=7493
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
||||| | ||||| ||||||| || || | ||| | || | ||| || || || |
Sbjct 4782 TCATAGTTCCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGT 4841
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
| |||| || || ||| | || ||||||||||| ||||||||||| ||||||||||| |
Sbjct 4842 AGTCTGCTAGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGAT 4901
Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979
| || || || ||||| || || ||
Sbjct 4902 CCGGCGGGATACCTTCCTTGTCCTG 4926
>seq155647
Length=3035
Score = 91.5 bits (100), Expect = 3e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| || | ||||| ||||| || || | | || ||||| ||||| || ||||| |
Sbjct 2166 CGTCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCT 2107
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| || || || ||| || ||||| || || || || ||||| || || ||||| |
Sbjct 2106 TGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTA 2047
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|||| ||||| |||| ||||| | ||| |||||||||||
Sbjct 2046 TGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 2007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 902870863217400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |