Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq169593 129 2e-24
seq189432 100 8e-16
seq181835 98.7 3e-15
seq194000 95.1 4e-14
seq192153 93.3 1e-13
seq111725 91.5 4e-13
seq180626 89.7 2e-12
seq195219 86.0 2e-11
seq173930 84.2 6e-11
>seq169593
Length=4175
Score = 129 bits (142), Expect = 2e-24
Identities = 275/406 (68%), Gaps = 6/406 (1%)
Strand=Plus/Plus
Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997
|||| |||||||| || | | || ||||||||||| ||||| |||||||| |
Sbjct 334 TAAACCCATCCATTTCAGTCAGCAGCTGGTTAAGTGTTTGCTCCCTCTCATCATTCCCTC 393
Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057
| | ||| ||| | || ||| | | | || |||||||| || || ||||||||||
Sbjct 394 CCCC--AAT-ACCGG--TCCCTC-TCTGCCTCCCGACAGCATCTATCTCATCAATGAAAA 447
Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117
|| ||||| |||||| | || | ||||| || || || | || ||||| |
Sbjct 448 CCAAGCACGGCGAATTTGCCTTTGCCTTGTTGAATAAGTCCCTCACTCTTGAAGCTCCGA 507
Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177
|| ||| |||| || | || || ||| |||| | | | ||| | ||| ||||
Sbjct 508 CTCCCACAAACATCTCAATGAACTCTGAACCGGAGAGTGAGAAGAAAGGCACACCGGCTT 567
Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237
| || || | ||| | ||||| ||||||||||| || || |||||||| ||| ||| |
Sbjct 568 CTCCAGCAATGGCCTTGGCCAGCAGTGTCTTACCAGTACCTGGTGGTCCAACTAGTAGCA 627
Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297
|||| ||||| | ||||||| | | | |||| || ||| | ||| ||| || |
Sbjct 628 CTCCTTTTGGAATCCTTGCCCCCACTGCAGCAAATTTTTCTGGGGTTCTTAGAAACTCAA 687
Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343
| || || | || || | ||||| |||||| ||| ||||||||
Sbjct 688 CTATCTCTTGAAAGTCTTGCTTTGCTTCATCAACTCCAGCTACATC 733
>seq189432
Length=7906
Score = 100 bits (110), Expect = 8e-16
Identities = 312/474 (66%), Gaps = 22/474 (5%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG-GTTTGCTT-AAATCCAT 288946
||||| || | || || ||||| | ||||| ||| || |||| ||| ||| ||||
Sbjct 360 ATATCTGCACGATTAGTCGCTGCAATTACAATGATACC--CGTGTTTCCTTCAAACCCAT 417
Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006
|||| ||| || | |||||||| || || || ||||| |||||| |||||
Sbjct 418 CCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCACCTC------ 471
Query 289007 CACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACA 289062
||| || | |||| ||| ||||||||||||||||| |||| || | |
Sbjct 472 ----CGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATG 527
Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122
|| |||| ||| | | || || || | || | || | ||| || |||| ||||
Sbjct 528 CAAGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCA 587
Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181
||| |||| || ||||| || || | || | | || | || | || |||||| ||
Sbjct 588 ACAAACATCTCCACAAACTCGGAGCCTGA-AATGGAGAAAAAAGGAACTCCTGCTTCTCC 646
Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241
|| | |||| | |||||||| ||||| || ||||| || || ||| | | || |||||
Sbjct 647 AGCAATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAAGCACTCC 706
Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301
|| || | || ||| ||| | | ||||||| |||| | ||| || || |
Sbjct 707 TTTAGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCAC 766
Query 289302 TTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354
||| | || | ||||| ||||| ||| || || ||||| |||| ||||
Sbjct 767 CTCCATGAAATCTTGCTTTGCTTCATCTACA-CCAGCAACATCGTCAAATGTAA 819
>seq181835
Length=5898
Score = 98.7 bits (108), Expect = 3e-15
Identities = 154/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105
|||| |||||||| |||||| || || ||||| || ||||| | ||| || |||| ||
Sbjct 3482 TACCCTTCCTCTTTCCACCCCCTTGGTCAACATAGCGGGCAGTGTCATTAAAAACACGTA 3423
Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165
|||| |||| |||||||||||| || ||||| ||||| || |||| || | | |
Sbjct 3422 GCATGGGAACAATACCATTGGATGTCCCATTTGTTCCACGGATATAGCTGCCTGTAGCAC 3363
Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225
| | |||||||| | | ||||| || || | | || ||| || || ||||
Sbjct 3362 GTATATTATGAACAGAGACACCAATTCCTCCCGCTGACTTGCTGATTGTTGCACACTCCT 3303
Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
| | ||| | | || ||||||||| |||||||| |||
Sbjct 3302 TCAAAGTTTCATATATTCCTTCAATACTATCATCTTTCAT 3263
>seq194000
Length=10408
Score = 95.1 bits (104), Expect = 4e-14
Identities = 214/316 (68%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
|||||| || |||||| ||| | | || | ||||| || |||||| ||| |||||
Sbjct 7749 CATAATATCCTCCATAGCCTTCACCAGTCGCCTTTGAATGTACCCAGTTTCAGAAGTTTT 7808
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
|| || || || || | ||| | | |||||||||||||| ||||| | ||||| ||
Sbjct 7809 AACCGCAGTGTCTATAATACCTTCTCTGCCACCCATAGCATGAAAGAAGAACTCTTGTGG 7868
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTC 302741
| ||| | | | | || |||| || || ||||| || || || |||| |
Sbjct 7869 GGTCAACCCTCGTAGATATGAATTCTCTACAAACCCACGGCTTTCTGGACCGTAATCATT 7928
Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-ATAGCCGTATGGGATACGCTTTCCAT 302800
| ||||||| || ||||| |||| | |||| | || | ||||| ||||| || |
Sbjct 7929 TA---TGGTAAAATGGGGCAGAGTCC-GATCTCTGAACCCAAAAGGGATTCGCTTACCCT 7984
Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGG 302860
|||| |||||||| || | || | ||||||||| || | ||| | ||| || || |
Sbjct 7985 CAACATTCTGCTGCCCAACACAAGCAATCATCTGTGATACATTAATGAAACTTCCTTTAG 8044
Query 302861 AGCCAGCATTTACCAT 302876
| || || | |||||
Sbjct 8045 ATCCTGCTGTAACCAT 8060
>seq192153
Length=9128
Score = 93.3 bits (102), Expect = 1e-13
Identities = 214/317 (68%), Gaps = 4/317 (1%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
||||| ||||||||||||||||| |||| | | |||| | |||||| || |
Sbjct 7881 ACCAATTGCATCAATTTCGTCAATAAAAACAATGCTAGGAGCACATTGTCTTGCTTCTTG 7822
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|||||| | || || | || | |||| |||||| ||||||| | ||| || ||| |
Sbjct 7821 AAATAAGTTCCTGACCCTCGACGGACCAACTCCAACAAACATTTCCATAAAATCTGAACC 7762
Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|||| | || | || | ||| | ||| ||||| || | || ||||||||||
Sbjct 7761 AGATA-TAGATAGAAAAGGCACACCAGATTCACCTGCAGTAGCTTTAGCAAGAAGTGTCT 7703
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266
| ||||| ||||| || || | | ||| | || || || | ||| || |||| | |
Sbjct 7702 TCCCTGTCCCAGGAGGGCCAACAAGAAGAGCCCCTTTCGGAATTTTGGCACCCAAC-TCC 7644
Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
| ||| |||| ||| |||| | || | |||| ||| | ||| | ||||||||
Sbjct 7643 TCATACTTCTTTGGGTTCTTAAGGAAGTGGACAAACTCCATTATTTCTTGCTTTGCCTCG 7584
Query 289327 TCACATCCTGCTACATC 289343
|| ||||| || |||||
Sbjct 7583 TCGCATCCAGCCACATC 7567
>seq111725
Length=1296
Score = 91.5 bits (100), Expect = 4e-13
Identities = 103/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
||||| | ||||| |||||||||||||| | |||||||||| |||||||| |||
Sbjct 406 GCAAAGAGATCTCTAACACGGGATGCTCCCATGCCAACATACAACTCTACAAACTCACTT 347
Query 289147 GCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
|| || |||| ||||| | ||| | ||||| || ||||| ||| | || | ||| |
Sbjct 346 GCAGAACAACTT--ATGAAAGGTACTTCAGCTTCCCCAGCTACAGCCTTTGCTAAAAGAG 289
Query 289205 TCTTACCTGTTCCAGG 289220
|||||||||| |||||
Sbjct 288 TCTTACCTGTCCCAGG 273
>seq180626
Length=5659
Score = 89.7 bits (98), Expect = 2e-12
Identities = 152/220 (69%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105
|||| ||||||||||||||| ||||| ||||| || ||||| | ||| || || | ||
Sbjct 2958 TACCCTTCCTCTTGCCACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTA 2899
Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165
|||| |||| | |||||| || || ||||| ||||| || |||| || | | |
Sbjct 2898 GCATTGGAACCACACCATTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCAC 2839
Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225
||| |||||||| | | ||| || || || | | || || ||| || ||||
Sbjct 2838 GAATATTATGAACAGAGACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCT 2779
Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
| | ||||| | || |||||||| ||||||| |||
Sbjct 2778 TCAAAGTATCATAGATTCCTTCAATGCTGTCATCTTTCAT 2739
>seq195219
Length=11697
Score = 86.0 bits (94), Expect = 2e-11
Identities = 83/104 (80%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923
||||||||| | ||||| ||||||||||| | ||||| | |||||||||||| ||
Sbjct 5284 ACACCAGCATAATGGAAGGTATTCAGAGTCATCTGAGTGGCAGGCTCACCAATAGACTGG 5343
Query 301924 GCCGCAATCATA-CCAACCATTTCTCCTGGTGCTACAATAGACT 301966
||||||| || | |||| ||||||||| || ||||||| ||||
Sbjct 5344 GCCGCAA-CACACCCAATCATTTCTCCAGGGGCTACAAGTGACT 5386
>seq173930
Length=4674
Score = 84.2 bits (92), Expect = 6e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
||||| | ||||||| || ||| ||||| || || || |||||| |||| | ||
Sbjct 1499 GGCGACTATACCACACATAACACAGACATGAACTCTATACGCATCACTCTGGTCAAACAG 1440
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
|| | ||| |||| | | || || || | |||||| || || || |||||||||||
Sbjct 1439 CCTCTCTTTGAGGAAGTGTGCAGCCCCATGAGCAATCATGCAGTCGCGTTCCATTTCACC 1380
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573
|| || ||||| |||||||| | | || || |||||||| | ||| ||
Sbjct 1379 AAATCGCAGACCTCCATCGCGGGATCGCCCTTCAGCAGGCTGCCTAGTAAG 1329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1468042239294411
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