Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq169593 129 2e-24 seq189432 100 8e-16 seq181835 98.7 3e-15 seq194000 95.1 4e-14 seq192153 93.3 1e-13 seq111725 91.5 4e-13 seq180626 89.7 2e-12 seq195219 86.0 2e-11 seq173930 84.2 6e-11 >seq169593 Length=4175 Score = 129 bits (142), Expect = 2e-24 Identities = 275/406 (68%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | || ||||||||||| ||||| |||||||| | Sbjct 334 TAAACCCATCCATTTCAGTCAGCAGCTGGTTAAGTGTTTGCTCCCTCTCATCATTCCCTC 393 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | ||| ||| | || ||| | | | || |||||||| || || |||||||||| Sbjct 394 CCCC--AAT-ACCGG--TCCCTC-TCTGCCTCCCGACAGCATCTATCTCATCAATGAAAA 447 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 || ||||| |||||| | || | ||||| || || || | || ||||| | Sbjct 448 CCAAGCACGGCGAATTTGCCTTTGCCTTGTTGAATAAGTCCCTCACTCTTGAAGCTCCGA 507 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 || ||| |||| || | || || ||| |||| | | | ||| | ||| |||| Sbjct 508 CTCCCACAAACATCTCAATGAACTCTGAACCGGAGAGTGAGAAGAAAGGCACACCGGCTT 567 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || | ||| | ||||| ||||||||||| || || |||||||| ||| ||| | Sbjct 568 CTCCAGCAATGGCCTTGGCCAGCAGTGTCTTACCAGTACCTGGTGGTCCAACTAGTAGCA 627 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 |||| ||||| | ||||||| | | | |||| || ||| | ||| ||| || | Sbjct 628 CTCCTTTTGGAATCCTTGCCCCCACTGCAGCAAATTTTTCTGGGGTTCTTAGAAACTCAA 687 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || || | || || | ||||| |||||| ||| |||||||| Sbjct 688 CTATCTCTTGAAAGTCTTGCTTTGCTTCATCAACTCCAGCTACATC 733 >seq189432 Length=7906 Score = 100 bits (110), Expect = 8e-16 Identities = 312/474 (66%), Gaps = 22/474 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG-GTTTGCTT-AAATCCAT 288946 ||||| || | || || ||||| | ||||| ||| || |||| ||| ||| |||| Sbjct 360 ATATCTGCACGATTAGTCGCTGCAATTACAATGATACC--CGTGTTTCCTTCAAACCCAT 417 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| ||| || | |||||||| || || || ||||| |||||| ||||| Sbjct 418 CCATTTCTGTCAATAGCTGATTAAGGGTCTGCTCTCTTTCGTCATTTCCACCTC------ 471 Query 289007 CACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 ||| || | |||| ||| ||||||||||||||||| |||| || | | Sbjct 472 ----CGATTCCAGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAAGACAATG 527 Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 || |||| ||| | | || || || | || | || | ||| || |||| |||| Sbjct 528 CAAGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACTCTGGAGGCACCAACACCA 587 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181 ||| |||| || ||||| || || | || | | || | || | || |||||| || Sbjct 588 ACAAACATCTCCACAAACTCGGAGCCTGA-AATGGAGAAAAAAGGAACTCCTGCTTCTCC 646 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241 || | |||| | |||||||| ||||| || ||||| || || ||| | | || ||||| Sbjct 647 AGCAATTGCCTTGGCCAGAAGGGTCTTTCCGGTTCCTGGGGGACCCACAAGAAGCACTCC 706 Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 || || | || ||| ||| | | ||||||| |||| | ||| || || | Sbjct 707 TTTAGGGATACGGGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCAC 766 Query 289302 TTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 ||| | || | ||||| ||||| ||| || || ||||| |||| |||| Sbjct 767 CTCCATGAAATCTTGCTTTGCTTCATCTACA-CCAGCAACATCGTCAAATGTAA 819 >seq181835 Length=5898 Score = 98.7 bits (108), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| |||||||| |||||| || || ||||| || ||||| | ||| || |||| || Sbjct 3482 TACCCTTCCTCTTTCCACCCCCTTGGTCAACATAGCGGGCAGTGTCATTAAAAACACGTA 3423 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| |||||||||||| || ||||| ||||| || |||| || | | | Sbjct 3422 GCATGGGAACAATACCATTGGATGTCCCATTTGTTCCACGGATATAGCTGCCTGTAGCAC 3363 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | |||||||| | | ||||| || || | | || ||| || || |||| Sbjct 3362 GTATATTATGAACAGAGACACCAATTCCTCCCGCTGACTTGCTGATTGTTGCACACTCCT 3303 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||| | | || ||||||||| |||||||| ||| Sbjct 3302 TCAAAGTTTCATATATTCCTTCAATACTATCATCTTTCAT 3263 >seq194000 Length=10408 Score = 95.1 bits (104), Expect = 4e-14 Identities = 214/316 (68%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | | || | ||||| || |||||| ||| ||||| Sbjct 7749 CATAATATCCTCCATAGCCTTCACCAGTCGCCTTTGAATGTACCCAGTTTCAGAAGTTTT 7808 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || || || || | ||| | | |||||||||||||| ||||| | ||||| || Sbjct 7809 AACCGCAGTGTCTATAATACCTTCTCTGCCACCCATAGCATGAAAGAAGAACTCTTGTGG 7868 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTC 302741 | ||| | | | | || |||| || || ||||| || || || |||| | Sbjct 7869 GGTCAACCCTCGTAGATATGAATTCTCTACAAACCCACGGCTTTCTGGACCGTAATCATT 7928 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-ATAGCCGTATGGGATACGCTTTCCAT 302800 | ||||||| || ||||| |||| | |||| | || | ||||| ||||| || | Sbjct 7929 TA---TGGTAAAATGGGGCAGAGTCC-GATCTCTGAACCCAAAAGGGATTCGCTTACCCT 7984 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGG 302860 |||| |||||||| || | || | ||||||||| || | ||| | ||| || || | Sbjct 7985 CAACATTCTGCTGCCCAACACAAGCAATCATCTGTGATACATTAATGAAACTTCCTTTAG 8044 Query 302861 AGCCAGCATTTACCAT 302876 | || || | ||||| Sbjct 8045 ATCCTGCTGTAACCAT 8060 >seq192153 Length=9128 Score = 93.3 bits (102), Expect = 1e-13 Identities = 214/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||||||||| |||| | | |||| | |||||| || | Sbjct 7881 ACCAATTGCATCAATTTCGTCAATAAAAACAATGCTAGGAGCACATTGTCTTGCTTCTTG 7822 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| | || || | || | |||| |||||| ||||||| | ||| || ||| | Sbjct 7821 AAATAAGTTCCTGACCCTCGACGGACCAACTCCAACAAACATTTCCATAAAATCTGAACC 7762 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | || | ||| | ||| ||||| || | || |||||||||| Sbjct 7761 AGATA-TAGATAGAAAAGGCACACCAGATTCACCTGCAGTAGCTTTAGCAAGAAGTGTCT 7703 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| ||||| || || | | ||| | || || || | ||| || |||| | | Sbjct 7702 TCCCTGTCCCAGGAGGGCCAACAAGAAGAGCCCCTTTCGGAATTTTGGCACCCAAC-TCC 7644 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| |||| ||| |||| | || | |||| ||| | ||| | |||||||| Sbjct 7643 TCATACTTCTTTGGGTTCTTAAGGAAGTGGACAAACTCCATTATTTCTTGCTTTGCCTCG 7584 Query 289327 TCACATCCTGCTACATC 289343 || ||||| || ||||| Sbjct 7583 TCGCATCCAGCCACATC 7567 >seq111725 Length=1296 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | ||||| |||||||||||||| | |||||||||| |||||||| ||| Sbjct 406 GCAAAGAGATCTCTAACACGGGATGCTCCCATGCCAACATACAACTCTACAAACTCACTT 347 Query 289147 GCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || |||| ||||| | ||| | ||||| || ||||| ||| | || | ||| | Sbjct 346 GCAGAACAACTT--ATGAAAGGTACTTCAGCTTCCCCAGCTACAGCCTTTGCTAAAAGAG 289 Query 289205 TCTTACCTGTTCCAGG 289220 |||||||||| ||||| Sbjct 288 TCTTACCTGTCCCAGG 273 >seq180626 Length=5659 Score = 89.7 bits (98), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||||||| ||||| ||||| || ||||| | ||| || || | || Sbjct 2958 TACCCTTCCTCTTGCCACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTA 2899 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| | |||||| || || ||||| ||||| || |||| || | | | Sbjct 2898 GCATTGGAACCACACCATTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCAC 2839 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| |||||||| | | ||| || || || | | || || ||| || |||| Sbjct 2838 GAATATTATGAACAGAGACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCT 2779 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||||| | || |||||||| ||||||| ||| Sbjct 2778 TCAAAGTATCATAGATTCCTTCAATGCTGTCATCTTTCAT 2739 >seq195219 Length=11697 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| | ||||| ||||||||||| | ||||| | |||||||||||| || Sbjct 5284 ACACCAGCATAATGGAAGGTATTCAGAGTCATCTGAGTGGCAGGCTCACCAATAGACTGG 5343 Query 301924 GCCGCAATCATA-CCAACCATTTCTCCTGGTGCTACAATAGACT 301966 ||||||| || | |||| ||||||||| || ||||||| |||| Sbjct 5344 GCCGCAA-CACACCCAATCATTTCTCCAGGGGCTACAAGTGACT 5386 >seq173930 Length=4674 Score = 84.2 bits (92), Expect = 6e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||||| | ||||||| || ||| ||||| || || || |||||| |||| | || Sbjct 1499 GGCGACTATACCACACATAACACAGACATGAACTCTATACGCATCACTCTGGTCAAACAG 1440 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | ||| |||| | | || || || | |||||| || || || ||||||||||| Sbjct 1439 CCTCTCTTTGAGGAAGTGTGCAGCCCCATGAGCAATCATGCAGTCGCGTTCCATTTCACC 1380 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || || ||||| |||||||| | | || || |||||||| | ||| || Sbjct 1379 AAATCGCAGACCTCCATCGCGGGATCGCCCTTCAGCAGGCTGCCTAGTAAG 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468042239294411