Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 264 1e-65
seq198106 214 2e-50
seq198282 183 3e-41
seq197127 132 5e-26
seq200167 127 2e-24
seq198484 120 3e-22
seq197886 118 1e-21
seq197639 102 9e-17
seq100777 102 9e-17
seq198608 100 3e-16
seq198491 96.9 4e-15
seq198248 91.5 2e-13
seq198455 87.8 2e-12
seq180125 84.2 2e-11
>seq198569
Length=8129
Score = 264 bits (292), Expect = 1e-65
Identities = 331/453 (73%), Gaps = 16/453 (4%)
Strand=Plus/Plus
Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966
|| ||||| ||||||||||||||| | |||||| |||||||| || ||||| |||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026
|||||||| ||||| || || || || ||||||| ||| | ||||||| | ||||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158086
|| ||| || |||| |||||||| || |||||||||||||| |||| |||| | |||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 158087 TTCCAAGCAGAACACAACATCCTTATGCACCC-GTTCCATATGCTCGGTGTTGCTGGGGT 158145
||||| || || ||||| |||||||||||||| ||| ||||| | ||||| ||||| ||
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019
Query 158146 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCG 158205
||| | || ||||| ||| ||||||||| || ||||| | | |
Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGG------------TTCCTTGGTAG--CT 3065
Query 158206 TGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGAC 158265
| || | ||||| | | || | || |||| || ||||||||||| || ||
Sbjct 3066 TCTAATCAGGGAAAC-CACCCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124
Query 158266 CTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 158325
||||| || || || || ||||| || || || || |||||||||||||| ||| ||
Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184
Query 158326 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158358
||||||||| ||||| || || || ||||| ||
Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq198106
Length=2703
Score = 214 bits (236), Expect = 2e-50
Identities = 510/763 (67%), Gaps = 26/763 (3%)
Strand=Plus/Plus
Query 159561 TGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATT 159620
||||| ||| | || || | |||| |||||| || || || || || || || |||||
Sbjct 626 TGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATA 685
Query 159621 GGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCT---CATTGGTATCCGTCCTTACAA 159676
||||||||| | |||| || ||||| || | ||| || | ||| | ||||| ||
Sbjct 686 GGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTGTTCAAT--TAT--GACCTTATAA 741
Query 159677 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATT 159736
||| ||||| ||||| | || |||| |||||| || || ||||| || || ||| |
Sbjct 742 TGCAATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACT 801
Query 159737 GGGTCAGTCCAGTTGGTTTTTC---GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 159793
||| ||| |||||||||| |||| | |||||| || |||| || ||| ||||
Sbjct 802 CGGTTAGTTTGGTTGGTTTTTTTGAGCTCAG--CTTTGGTGTATCAGCTATATTTTGATT 859
Query 159794 CCTG-TTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAG 159852
| | || || |||||| ||||| || ||||| || || | | |||||||| |||
Sbjct 860 CATCCTTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGTTCATATGATTAGAG 919
Query 159853 TTGCTGGTATACTAGGTGGAGCACTACTCAG---TGCCATC--CATGGCGTTACTGTAGA 159907
||| || | || | | || || | || | ||| || |||||| | ||| ||
Sbjct 920 TTGTTGATGTATTGGCTGCGGCTTTGCTATGCTATGCAATATTCATGGCACTGTTGTGGA 979
Query 159908 GAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCA 159967
|| || | | |||||||||||| |||||||| || ||| ||| | |||||||
Sbjct 980 AAATACTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCTTTTAACACAACTCA 1039
Query 159968 AGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTAT 160027
|| | || ||||| || |||||||||| | | |||| ||| | || || || || |
Sbjct 1040 AGCTAAAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGT 1099
Query 160028 TGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCT 160087
||| ||||| || || | || | |||||||| ||||| ||| | || | | |
Sbjct 1100 TGCTTTTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAACTAGTAACCGATGC 1159
Query 160088 TTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGT 160147
|||| || |||| | || || || | || || ||||| || || ||| |
Sbjct 1160 ATGGATGAGTGCTCTTGGAGCAGTCGGTCTGGCCGTGAACCTGCGTGCCTATGACTTCAT 1219
Query 160148 AAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACAT 160207
| ||| || | | | |||| |||| |||||||| |||||| || |||
Sbjct 1220 TTCTTTAGAAATTCGCGTACTAGAAAATCCTAAATTTGAG-------ACACCATAAGCAT 1272
Query 160208 CCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTT 160267
|| || || || || | ||||| ||| |||| || ||||| || ||||||||| |
Sbjct 1273 TCTCTTAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCT 1332
Query 160268 TATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAA 160310
||| ||||| || || || | || | || ||||| ||||||
Sbjct 1333 TATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 1375
>seq198282
Length=4172
Score = 183 bits (202), Expect = 3e-41
Identities = 214/289 (74%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 159988 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGT 160047
||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || |
Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60
Query 160048 GGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 160107
|| | |||||||| ||||| ||||| || || | ||| | |||| || ||||
Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120
Query 160108 TTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAG 160167
| | || || || || || || ||||| || || ||||| ||| || || | ||||
Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180
Query 160168 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTAC 160227
| |||||||| ||||||||||| ||||||||||||||||| || || || || || | |
Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240
Query 160228 GTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 160276
|||| ||| |||| || ||||| || ||||||||| |||| |||||
Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289
>seq197127
Length=16832
Score = 132 bits (146), Expect = 5e-26
Identities = 120/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 157995 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158054
||||||| ||| | ||||||| | |||||||| ||| || |||| |||||||| |
Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773
Query 158055 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158114
| |||||||||||||| |||| |||| | |||||||| || || ||||| ||||||||||
Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713
Query 158115 ACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158145
|||| || || ||| | ||||| ||||| ||
Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682
>seq200167
Length=15642
Score = 127 bits (140), Expect = 2e-24
Identities = 111/138 (80%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 158041 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158100
|| ||||||||| || |||||||||||||| |||| ||| |||||||| || || ||
Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767
Query 158101 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158160
|||||||||||||||||| || || ||| | ||||| ||||| ||||| ||||| || ||
Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707
Query 158161 TTTCTCTGCTATGCACGG 158178
||| | ||||||| ||
Sbjct 10706 GTTCAGTACTATGCATGG 10689
>seq198484
Length=6561
Score = 120 bits (132), Expect = 3e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 158423 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 158482
|| |||||||| |||||||| || | ||||| |||| || ||||| | || ||||||
Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293
Query 158483 GCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 158542
|| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| || ||
Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353
Query 158543 AACTTCCCACTCGACCTTGCTGCT 158566
|||||||| || ||||| || |||
Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377
>seq197886
Length=1258
Score = 118 bits (130), Expect = 1e-21
Identities = 191/275 (69%), Gaps = 5/275 (2%)
Strand=Plus/Plus
Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356
|| || |||||||||||||| | | | || || || || | || || || ||||||||
Sbjct 334 GGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTA 393
Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 158416
||| |||||||| | || |||| ||||| | | || | | |||| ||
Sbjct 394 ACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTC 453
Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476
||||| || ||||| || |||||||| ||| | ||||| ||| |||||||| | ||
Sbjct 454 AACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAAG 513
Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGT-----TATGCATGAGC 158531
|| ||||| ||| | | |||| ||| |||||| | |||| ||| ||||| |
Sbjct 514 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAAC 573
Query 158532 GTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566
|||| || || |||||||| || ||||| | ||||
Sbjct 574 GTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608
>seq197639
Length=228
Score = 102 bits (112), Expect = 9e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 158451 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTG 158510
||||| |||| || ||||| | || |||||||| ||| | | ||||| ||| ||||
Sbjct 221 TTGATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTG 162
Query 158511 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566
||||||||||||||||||| ||||| || || |||||||| || ||||| || |||
Sbjct 161 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106
>seq100777
Length=1053
Score = 102 bits (112), Expect = 9e-17
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 159561 TGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATT 159620
||||| ||| | ||||| | |||| |||||| || || || || || |||| |||||
Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994
Query 159621 GGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGTCCTTACAATGC 159679
||||||||| | || || || ||||| || || ||| | | | || ||||| |||||
Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAAT-TACGACCTTATAATGC 935
Query 159680 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159712
||||| |||||||| || ||||||||||||||
Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902
>seq198608
Length=9413
Score = 100 bits (110), Expect = 3e-16
Identities = 125/170 (74%), Gaps = 1/170 (1%)
Strand=Plus/Minus
Query 160050 CTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATT 160109
||||||||||| ||||| ||||| || || | ||| | |||| || |||| |
Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928
Query 160110 ATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCA 160169
| || || || || || || ||||| || || ||||| ||| || || | |||||
Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868
Query 160170 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGA 160219
|||||||| ||||||||||| ||||||||| ||||||| || || |||||
Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACC-AAAACATTCTCTTAAACGA 2819
>seq198491
Length=6715
Score = 96.9 bits (106), Expect = 4e-15
Identities = 134/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 159747 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 159806
||||||||||| | || |||||| || | || || ||| ||||| | | || ||
Sbjct 5667 AGTTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTT 5609
Query 159807 CAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTA 159866
||||| ||||| || |||||||| || || || ||||||||||||||||| ||| || ||
Sbjct 5608 CAAGG-TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTA 5550
Query 159867 GGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGAT 159926
|| | || | || | || || ||||||| || || || || || | | |||||||
Sbjct 5549 GGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGAT 5490
Query 159927 GGAGA 159931
|| ||
Sbjct 5489 GGTGA 5485
>seq198248
Length=3867
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 158348 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 158407
|| ||||| ||||| |||||||| || || ||||||||||| || | || || |||
Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332
Query 158408 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 158467
||||| ||||| || || |||||||| |||||||| || | ||||| |||| ||| ||
Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGT 272
>seq198455
Length=6199
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 159720 TTCCTCATCTACCCAT-TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 159778
||||| || || ||| | ||| | || |||||||||| || || |||||| ||
Sbjct 6024 TTCCTGATTTATCCACCTTGGTGAATCTGGTTGGTTTTTTGCGCCAAGCTTTGGCGTATA 6083
Query 159779 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTT 159838
| | || ||| ||||| | | || ||||||| ||||| || |||||||| || || ||
Sbjct 6084 A-CTATATTTCGATTCATCCTTTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATT 6142
Query 159839 CCATATGATGGGAGTTGCTGGTATACTAGG 159868
||||||||||||||||| ||| || ||||
Sbjct 6143 TCATATGATGGGAGTTGCCGGTGTATTAGG 6172
>seq180125
Length=5570
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296
||||||| ||||||||||||||| | || | ||||||| | ||||| ||||| || ||
Sbjct 919 GGTTACAGATTCGGTCAAGAGGAATAAACTTCTAACATCATAGCAGCTCATGGTTATTTT 978
Query 158297 GGTCGTTTGATCTTCCAATACGCT 158320
|| || |||||||||||||| |||
Sbjct 979 GGCCGCTTGATCTTCCAATATGCT 1002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547002072499960
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