Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq198569 264 1e-65 seq198106 214 2e-50 seq198282 183 3e-41 seq197127 132 5e-26 seq200167 127 2e-24 seq198484 120 3e-22 seq197886 118 1e-21 seq197639 102 9e-17 seq100777 102 9e-17 seq198608 100 3e-16 seq198491 96.9 4e-15 seq198248 91.5 2e-13 seq198455 87.8 2e-12 seq180125 84.2 2e-11 >seq198569 Length=8129 Score = 264 bits (292), Expect = 1e-65 Identities = 331/453 (73%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 || ||||| ||||||||||||||| | |||||| |||||||| || ||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| ||||| || || || || ||||||| ||| | ||||||| | |||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 158086 || ||| || |||| |||||||| || |||||||||||||| |||| |||| | ||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 158087 TTCCAAGCAGAACACAACATCCTTATGCACCC-GTTCCATATGCTCGGTGTTGCTGGGGT 158145 ||||| || || ||||| |||||||||||||| ||| ||||| | ||||| ||||| || Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 158146 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCG 158205 ||| | || ||||| ||| ||||||||| || ||||| | | | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGG------------TTCCTTGGTAG--CT 3065 Query 158206 TGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGAC 158265 | || | ||||| | | || | || |||| || ||||||||||| || || Sbjct 3066 TCTAATCAGGGAAAC-CACCCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 158266 CTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 158325 ||||| || || || || ||||| || || || || |||||||||||||| ||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 158326 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158358 ||||||||| ||||| || || || ||||| || Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198106 Length=2703 Score = 214 bits (236), Expect = 2e-50 Identities = 510/763 (67%), Gaps = 26/763 (3%) Strand=Plus/Plus Query 159561 TGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATT 159620 ||||| ||| | || || | |||| |||||| || || || || || || || ||||| Sbjct 626 TGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATA 685 Query 159621 GGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCT---CATTGGTATCCGTCCTTACAA 159676 ||||||||| | |||| || ||||| || | ||| || | ||| | ||||| || Sbjct 686 GGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTGTTCAAT--TAT--GACCTTATAA 741 Query 159677 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATT 159736 ||| ||||| ||||| | || |||| |||||| || || ||||| || || ||| | Sbjct 742 TGCAATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACT 801 Query 159737 GGGTCAGTCCAGTTGGTTTTTC---GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 159793 ||| ||| |||||||||| |||| | |||||| || |||| || ||| |||| Sbjct 802 CGGTTAGTTTGGTTGGTTTTTTTGAGCTCAG--CTTTGGTGTATCAGCTATATTTTGATT 859 Query 159794 CCTG-TTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAG 159852 | | || || |||||| ||||| || ||||| || || | | |||||||| ||| Sbjct 860 CATCCTTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGTTCATATGATTAGAG 919 Query 159853 TTGCTGGTATACTAGGTGGAGCACTACTCAG---TGCCATC--CATGGCGTTACTGTAGA 159907 ||| || | || | | || || | || | ||| || |||||| | ||| || Sbjct 920 TTGTTGATGTATTGGCTGCGGCTTTGCTATGCTATGCAATATTCATGGCACTGTTGTGGA 979 Query 159908 GAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCA 159967 || || | | |||||||||||| |||||||| || ||| ||| | ||||||| Sbjct 980 AAATACTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCTTTTAACACAACTCA 1039 Query 159968 AGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTAT 160027 || | || ||||| || |||||||||| | | |||| ||| | || || || || | Sbjct 1040 AGCTAAAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGT 1099 Query 160028 TGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCT 160087 ||| ||||| || || | || | |||||||| ||||| ||| | || | | | Sbjct 1100 TGCTTTTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAACTAGTAACCGATGC 1159 Query 160088 TTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGT 160147 |||| || |||| | || || || | || || ||||| || || ||| | Sbjct 1160 ATGGATGAGTGCTCTTGGAGCAGTCGGTCTGGCCGTGAACCTGCGTGCCTATGACTTCAT 1219 Query 160148 AAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACAT 160207 | ||| || | | | |||| |||| |||||||| |||||| || ||| Sbjct 1220 TTCTTTAGAAATTCGCGTACTAGAAAATCCTAAATTTGAG-------ACACCATAAGCAT 1272 Query 160208 CCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTT 160267 || || || || || | ||||| ||| |||| || ||||| || ||||||||| | Sbjct 1273 TCTCTTAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCT 1332 Query 160268 TATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAA 160310 ||| ||||| || || || | || | || ||||| |||||| Sbjct 1333 TATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 1375 >seq198282 Length=4172 Score = 183 bits (202), Expect = 3e-41 Identities = 214/289 (74%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 159988 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGT 160047 ||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || | Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 160048 GGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 160107 || | |||||||| ||||| ||||| || || | ||| | |||| || |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 160108 TTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAG 160167 | | || || || || || || ||||| || || ||||| ||| || || | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 160168 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTAC 160227 | |||||||| ||||||||||| ||||||||||||||||| || || || || || | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 160228 GTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 160276 |||| ||| |||| || ||||| || ||||||||| |||| ||||| Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289 >seq197127 Length=16832 Score = 132 bits (146), Expect = 5e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 157995 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158054 ||||||| ||| | ||||||| | |||||||| ||| || |||| |||||||| | Sbjct 16832 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773 Query 158055 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158114 | |||||||||||||| |||| |||| | |||||||| || || ||||| |||||||||| Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713 Query 158115 ACCCGTTCCATATGCTCGGTGTTGCTGGGGT 158145 |||| || || ||| | ||||| ||||| || Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq200167 Length=15642 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 158041 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158100 || ||||||||| || |||||||||||||| |||| ||| |||||||| || || || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 158101 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158160 |||||||||||||||||| || || ||| | ||||| ||||| ||||| ||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 158161 TTTCTCTGCTATGCACGG 158178 ||| | ||||||| || Sbjct 10706 GTTCAGTACTATGCATGG 10689 >seq198484 Length=6561 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 158423 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 158482 || |||||||| |||||||| || | ||||| |||| || ||||| | || |||||| Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGG 6293 Query 158483 GCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 158542 || ||| | | ||||| ||| ||||||||||||||||||||||| ||||| || || Sbjct 6294 GCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 6353 Query 158543 AACTTCCCACTCGACCTTGCTGCT 158566 |||||||| || ||||| || ||| Sbjct 6354 AACTTCCCTCTAGACCTAGCGGCT 6377 >seq197886 Length=1258 Score = 118 bits (130), Expect = 1e-21 Identities = 191/275 (69%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 || || |||||||||||||| | | | || || || || | || || || |||||||| Sbjct 334 GGCCGATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTA 393 Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 158416 ||| |||||||| | || |||| ||||| | | || | | |||| || Sbjct 394 ACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTC 453 Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||||| || ||||| || |||||||| ||| | ||||| ||| |||||||| | || Sbjct 454 AACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGATAATCAAGGTCGTGTAATTAAG 513 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGT-----TATGCATGAGC 158531 || ||||| ||| | | |||| ||| |||||| | |||| ||| ||||| | Sbjct 514 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAAC 573 Query 158532 GTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566 |||| || || |||||||| || ||||| | |||| Sbjct 574 GTAATGCTCATAACTTCCCTCTAGACCTAGTTGCT 608 >seq197639 Length=228 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 158451 TTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTG 158510 ||||| |||| || ||||| | || |||||||| ||| | | ||||| ||| |||| Sbjct 221 TTGATAGTCAAGGCCGTGTAATTAATACCTGGGCCGATATCATTAACCGTGCTAACCTTG 162 Query 158511 GTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566 ||||||||||||||||||| ||||| || || |||||||| || ||||| || ||| Sbjct 161 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCGGCT 106 >seq100777 Length=1053 Score = 102 bits (112), Expect = 9e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 159561 TGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATT 159620 ||||| ||| | ||||| | |||| |||||| || || || || || |||| ||||| Sbjct 1053 TGGTGTCAATTAGGGGGTCTGTGGACTTTTGTTGCTCTTCATGGCGCTTTCGGACTAATA 994 Query 159621 GGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGTCCTTACAATGC 159679 ||||||||| | || || || ||||| || || ||| | | | || ||||| ||||| Sbjct 993 GGTTTCATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAAT-TACGACCTTATAATGC 935 Query 159680 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159712 ||||| |||||||| || |||||||||||||| Sbjct 934 AATTGCATTCTCTGGCCCAATTGCTGTTTTTGT 902 >seq198608 Length=9413 Score = 100 bits (110), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 160050 CTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATT 160109 ||||||||||| ||||| ||||| || || | ||| | |||| || |||| | Sbjct 2987 CTTCATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTA 2928 Query 160110 ATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCA 160169 | || || || || || || ||||| || || ||||| ||| || || | ||||| Sbjct 2927 GTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCG 2868 Query 160170 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGA 160219 |||||||| ||||||||||| ||||||||| ||||||| || || ||||| Sbjct 2867 GAAGATCCTGAATTTGAGACTTTCTACACC-AAAACATTCTCTTAAACGA 2819 >seq198491 Length=6715 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 159747 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 159806 ||||||||||| | || |||||| || | || || ||| ||||| | | || || Sbjct 5667 AGTTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTT 5609 Query 159807 CAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTA 159866 ||||| ||||| || |||||||| || || || ||||||||||||||||| ||| || || Sbjct 5608 CAAGG-TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTA 5550 Query 159867 GGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGAT 159926 || | || | || | || || ||||||| || || || || || | | ||||||| Sbjct 5549 GGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGAT 5490 Query 159927 GGAGA 159931 || || Sbjct 5489 GGTGA 5485 >seq198248 Length=3867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 158348 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 158407 || ||||| ||||| |||||||| || || ||||||||||| || | || || ||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 158408 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 158467 ||||| ||||| || || |||||||| |||||||| || | ||||| |||| ||| || Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGT 272 >seq198455 Length=6199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 159720 TTCCTCATCTACCCAT-TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 159778 ||||| || || ||| | ||| | || |||||||||| || || |||||| || Sbjct 6024 TTCCTGATTTATCCACCTTGGTGAATCTGGTTGGTTTTTTGCGCCAAGCTTTGGCGTATA 6083 Query 159779 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTT 159838 | | || ||| ||||| | | || ||||||| ||||| || |||||||| || || || Sbjct 6084 A-CTATATTTCGATTCATCCTTTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCATT 6142 Query 159839 CCATATGATGGGAGTTGCTGGTATACTAGG 159868 ||||||||||||||||| ||| || |||| Sbjct 6143 TCATATGATGGGAGTTGCCGGTGTATTAGG 6172 >seq180125 Length=5570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 ||||||| ||||||||||||||| | || | ||||||| | ||||| ||||| || || Sbjct 919 GGTTACAGATTCGGTCAAGAGGAATAAACTTCTAACATCATAGCAGCTCATGGTTATTTT 978 Query 158297 GGTCGTTTGATCTTCCAATACGCT 158320 || || |||||||||||||| ||| Sbjct 979 GGCCGCTTGATCTTCCAATATGCT 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547002072499960