Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq198569 241 1e-58 seq199332 159 4e-34 seq197706 134 2e-26 seq197127 122 1e-22 seq198484 87.8 2e-12 seq197639 87.8 2e-12 >seq198569 Length=8129 Score = 241 bits (266), Expect = 1e-58 Identities = 327/453 (72%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 72562 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 72621 || |||||| | |||||||||| | | | | || ||| |||||||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 72622 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 72681 ||||| ||||| ||||| | || || ||| || ||| | | |||||| | ||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 72682 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 72741 || || |||||||| ||||| ||||| ||||| ||||| |||||||||||| |||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 72742 TTCCAAGCAGAACACAACATACTAATGCACCC-CTTCCATATGGCAGGTGTAGCAGGTAT 72800 ||||| || || ||||| || || |||||||| ||| ||||| ||||||||| ||| | Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 72801 GTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAG 72860 || | || ||| |||| ||| ||||| ||||| |||| || | ||||||||| Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAG 3074 Query 72861 AGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC 72920 || || || || | | || || || | || || ||||| || ||||| Sbjct 3075 GGAAACCAC----CCCGCTAATGAA------GGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 72921 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 72980 ||||| ||||| ||||||||||| || || || |||| |||||||| ||||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 72981 CAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 ||||||||||||||| ||||| || ||||| || Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq199332 Length=2940 Score = 159 bits (176), Expect = 4e-34 Identities = 234/331 (71%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| |||||| |||||||| || | || ||||| ||| Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || ||||||| || | || | ||||||||||| ||| || || || Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| ||||| || | || || ||| | ||||| || || ||| Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| | || | | | | | | ||||| || ||||| Sbjct 2357 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGT 2298 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 ||||| |||||||| ||| || || |||| ||||||||| || || |||| ||||| Sbjct 2297 CCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTT 2238 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTT 73694 || | || || | |||||||| ||||||| Sbjct 2237 GCTCTCCACGGCGCTTTTGGACTAATAGGTT 2207 >seq197706 Length=393 Score = 134 bits (148), Expect = 2e-26 Identities = 204/290 (70%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 72271 TACGTTGGTTGGTTTGGTGTCTTAATGATCCC-ATGT--------CTTCTAACTGCTGCT 72321 ||| |||| |||| |||||| || |||||||| | | || ||||||| || Sbjct 78 TACATTGGATGGTATGGTGTTTTGATGATCCCTACGGACCCCACCCTATTAACTGCAACT 137 Query 72322 GCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAA 72381 || || ||| | || ||||| |||||||||||||||||||| || || || | ||| Sbjct 138 TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAA 197 Query 72382 CCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCT 72441 || ||| | || ||| | | ||||| ||||| || ||||| ||||| | |||| || Sbjct 198 CCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACT 257 Query 72442 TCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGG 72501 || || ||||| || ||||| || || || |||||||| || | | || || ||| Sbjct 258 TCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGG 317 Query 72502 TTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGG 72551 || || || || |||||||| || || || || | |||||| | |||| Sbjct 318 TTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 367 >seq197127 Length=16832 Score = 122 bits (134), Expect = 1e-22 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 72651 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 72710 ||| || ||| | | |||||| | ||||| || || |||||||| ||||| ||||| Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772 Query 72711 TATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCA 72770 ||||| ||||| |||||||||||| |||| ||||| || || ||||| || || ||||| Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712 Query 72771 CCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 72806 ||| || || ||| ||||||||| || ||||||| Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678 >seq198484 Length=6561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 || |||| ||| | ||||| | || |||||||| |||||||||||||||||| | ||| Sbjct 6288 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 6347 Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217 || || |||||||| ||||||||||| Sbjct 6348 GCTCATAACTTCCCTCTAGACCTAGC 6373 >seq197639 Length=228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 || |||| ||| | ||||| | || |||||||| |||||||||||||||||| | ||| Sbjct 195 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 136 Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217 || || |||||||| ||||||||||| Sbjct 135 GCTCATAACTTCCCTCTAGACCTAGC 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571439962333240