Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 241 1e-58
seq199332 159 4e-34
seq197706 134 2e-26
seq197127 122 1e-22
seq198484 87.8 2e-12
seq197639 87.8 2e-12
>seq198569
Length=8129
Score = 241 bits (266), Expect = 1e-58
Identities = 327/453 (72%), Gaps = 16/453 (4%)
Strand=Plus/Plus
Query 72562 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 72621
|| |||||| | |||||||||| | | | | || ||| |||||||||| |||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 72622 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 72681
||||| ||||| ||||| | || || ||| || ||| | | |||||| | |||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 72682 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 72741
|| || |||||||| ||||| ||||| ||||| ||||| |||||||||||| ||||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 72742 TTCCAAGCAGAACACAACATACTAATGCACCC-CTTCCATATGGCAGGTGTAGCAGGTAT 72800
||||| || || ||||| || || |||||||| ||| ||||| ||||||||| ||| |
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019
Query 72801 GTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAG 72860
|| | || ||| |||| ||| ||||| ||||| |||| || | |||||||||
Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGTAGCT----TCTAATCAG 3074
Query 72861 AGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC 72920
|| || || || | | || || || | || || ||||| || |||||
Sbjct 3075 GGAAACCAC----CCCGCTAATGAA------GGGTACAGATTTGGTCAAGAGGAGGAAAC 3124
Query 72921 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 72980
||||| ||||| ||||||||||| || || || |||| |||||||| ||||| ||
Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184
Query 72981 CAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013
||||||||||||||| ||||| || ||||| ||
Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq199332
Length=2940
Score = 159 bits (176), Expect = 4e-34
Identities = 234/331 (71%), Gaps = 0/331 (0%)
Strand=Plus/Minus
Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423
||||| || | ||||| |||||| |||||| |||||||| || | || ||||| |||
Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478
Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483
|| || || || ||||||| || | || | ||||||||||| ||| || || ||
Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418
Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543
|| || |||||||| ||||| || | || || ||| | ||||| || || |||
Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358
Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603
|| || ||||| || || |||| | || | | | | | | ||||| || |||||
Sbjct 2357 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGT 2298
Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663
||||| |||||||| ||| || || |||| ||||||||| || || |||| |||||
Sbjct 2297 CCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTT 2238
Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTT 73694
|| | || || | |||||||| |||||||
Sbjct 2237 GCTCTCCACGGCGCTTTTGGACTAATAGGTT 2207
>seq197706
Length=393
Score = 134 bits (148), Expect = 2e-26
Identities = 204/290 (70%), Gaps = 9/290 (3%)
Strand=Plus/Plus
Query 72271 TACGTTGGTTGGTTTGGTGTCTTAATGATCCC-ATGT--------CTTCTAACTGCTGCT 72321
||| |||| |||| |||||| || |||||||| | | || ||||||| ||
Sbjct 78 TACATTGGATGGTATGGTGTTTTGATGATCCCTACGGACCCCACCCTATTAACTGCAACT 137
Query 72322 GCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAA 72381
|| || ||| | || ||||| |||||||||||||||||||| || || || | |||
Sbjct 138 TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAA 197
Query 72382 CCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCT 72441
|| ||| | || ||| | | ||||| ||||| || ||||| ||||| | |||| ||
Sbjct 198 CCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACT 257
Query 72442 TCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGG 72501
|| || ||||| || ||||| || || || |||||||| || | | || || |||
Sbjct 258 TCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGG 317
Query 72502 TTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGG 72551
|| || || || |||||||| || || || || | |||||| | ||||
Sbjct 318 TTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 367
>seq197127
Length=16832
Score = 122 bits (134), Expect = 1e-22
Identities = 121/156 (78%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 72651 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 72710
||| || ||| | | |||||| | ||||| || || |||||||| ||||| |||||
Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772
Query 72711 TATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCA 72770
||||| ||||| |||||||||||| |||| ||||| || || ||||| || || |||||
Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712
Query 72771 CCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 72806
||| || || ||| ||||||||| || |||||||
Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678
>seq198484
Length=6561
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191
|| |||| ||| | ||||| | || |||||||| |||||||||||||||||| | |||
Sbjct 6288 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 6347
Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217
|| || |||||||| |||||||||||
Sbjct 6348 GCTCATAACTTCCCTCTAGACCTAGC 6373
>seq197639
Length=228
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191
|| |||| ||| | ||||| | || |||||||| |||||||||||||||||| | |||
Sbjct 195 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 136
Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217
|| || |||||||| |||||||||||
Sbjct 135 GCTCATAACTTCCCTCTAGACCTAGC 110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571439962333240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |