Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq197427 230 3e-54 seq158369 86.0 8e-11 >seq197427 Length=19924 Score = 230 bits (254), Expect = 3e-54 Identities = 242/315 (77%), Gaps = 5/315 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||||||||| || |||| || || ||| Sbjct 14261 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGG 14320 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||| Sbjct 14321 ACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAG 14380 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| |||| ||||| |||||||||||| | || | | |||||||| Sbjct 14381 AAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGG 14440 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||||| | ||| || || || || || ||||||| ||||| || || || ||| Sbjct 14441 CGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTG 14500 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTGTC 869928 ||||| ||||| | ||| |||| ||| || || | | ||||| | |||| ||| | Sbjct 14501 TACATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATCTGGGTTTGGC 14560 Query 869929 GCGCAACAGGGGTTC 869943 | || |||||||| Sbjct 14561 G-TCAGGAGGGGTTC 14574 >seq158369 Length=3221 Score = 86.0 bits (94), Expect = 8e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190 ||||||| | | ||| | ||||||| |||||| | ||||| | || || || || Sbjct 1894 GTGGGACGAAGCGTTCGTCAACGTCGATCAGCCCGTGTTGTTTGATCTCATACTGGCAGC 1835 Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 || || || |||||||| ||||| ||| | || || | ||||| ||||||| Sbjct 1834 AAATTATCTGAACATCAAGAGCCTGCTAGATTTGACATGTCAGACGGTGGCGGACATGAT 1775 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||| |||| | || ||||| ||||||||| ||||||||| || ||| Sbjct 1774 CAAGGACAAGACTCCAGAGGAAGTCCGCAAGATATTTAACATCGAGAACG 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6090709604269351