Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq176217 91.5 1e-13
seq156113 91.5 1e-13
seq194317 89.7 4e-13
seq181690 84.2 2e-11
>seq176217
Length=4970
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||||||||| || |||||| | ||||| || ||||| || | || ||| | |
Sbjct 2518 ATGCAAATATTCGTGAAAACTCTCACCGGGAAGACCATCACTTTGGAGGTGGAAAGTTCC 2459
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | || || ||||| || || ||||| | ||| ||| ||
Sbjct 2458 GATACAATTGATAACGTTAAGGCAAAGATCCAAGATAAGGAAGGGATTCCCCCGGACCAG 2399
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || || || | ||| || ||||| |||||||||| || || | ||||||||||||
Sbjct 2398 CAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGGAGGACCCTAGCGGATTACAAC 2339
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| ||||| || || || ||||| |||||
Sbjct 2338 ATCCAAAAGGAGTCGACCCTGCACTTGGTG 2309
>seq156113
Length=3066
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || |||||||| ||||||||||||| || ||| | ||| ||| |
Sbjct 886 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACCTTGGAAGTCGAGAGCTCC 945
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| ||| | | ||||| || || ||||| ||||| | || ||||||
Sbjct 946 GATACTATCGACAATGTAAAGGCCAAAATCCAAGACAAGGAAGGGATTCCTCCGGATCAG 1005
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | | |||| || ||||| || |||| |||| |||| | |||||||| |||
Sbjct 1006 CAGCGGTTGATTTTCGCTGGTAAGCAATTGGAAGATGGGCGAACCCTAGCGGATTATAAC 1065
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || |||||||| |||||
Sbjct 1066 ATCCAGAAGGAGTCGACGTTGCATCTGGTG 1095
>seq194317
Length=10706
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || || |||||||| |||||||| |||||||| ||| | || || |
Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| || ||| | | || ||| ||||| |||||||||||| | || ||
Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
||||| | ||||| | || || || ||||||||||| | ||||| | || || |||
Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356
Query 110450 AACATTCAAAAAGAATCTACGTTGCAC 110476
||||| || || ||||| ||| | |||
Sbjct 1355 AACATCCAGAAGGAATCCACGCTCCAC 1329
>seq181690
Length=5866
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||||||||| ||||| | || || || ||||| ||| | ||| |||| |
Sbjct 3189 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAAGTGGAGAGTTCG 3130
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | || || |||||| || || || || | || || ||
Sbjct 3129 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAG 3070
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| ||||| | ||| || |||||||| || || | | || | |||||||||||
Sbjct 3069 CAAAGGCTTATCTTTGCTGGAAAACAGCTTGAAGACGGACGCACCCTTGCGGATTACAAT 3010
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||||| ||||| || | ||| ||||
Sbjct 3009 ATTCAAAAGGAATCGACCCTTCACTTGGT 2981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 411834277204079
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |