Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 178 2e-38
>seq197427
Length=19924
Score = 178 bits (196), Expect = 2e-38
Identities = 192/254 (76%), Gaps = 3/254 (1%)
Strand=Plus/Plus
Query 796147 CTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATG 796206
|||||||| | ||| ||||||||||||||||| | ||||||||||||||| |||||
Sbjct 14303 CTGGCCTCAGCTACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATA 14362
Query 796207 CCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTG 796266
||||| ||||||||| |||||||||||||| |||| ||||| |||||||||||| |
Sbjct 14363 CCGTCAGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTC 14422
Query 796267 AGCG---AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323
|| | |||||||| ||||| | ||| ||||| || || || ||||| |||
Sbjct 14423 AGGGTTTCCTCCCAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAG 14482
Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACA 796383
||||| || || || |||||||| ||||| || || |||| ||| || ||||
Sbjct 14483 GAGGCTTCTGCTTTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAG 14542
Query 796384 AAGCGATTGGGGTT 796397
||||||| |||||
Sbjct 14543 AAGCGATCTGGGTT 14556
Score = 170 bits (188), Expect = 3e-36
Identities = 233/324 (72%), Gaps = 6/324 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||| | |||||| |||||| ||| | || ||||| | ||||||||
Sbjct 13982 CCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGGCATCAACCCGCGCTTT 14041
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| ||||| || ||||| || || ||||| || || || |||||| ||||||
Sbjct 14042 TTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAAG 14101
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
| |||| |||||||| |||| || ||| | || ||||||||| | ||||||
Sbjct 14102 GCAACGATTCGCTCGGCGAAAGACTC---GCCACC---GTCGATCCACTTGAGGGCCCAC 14155
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
| ||||| || ||| | || | ||| ||||| ||| | || || |||||||||||
Sbjct 14156 TTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCCGGTCCTTCTCG 14215
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
| ||||||| ||| | |||| | ||| ||| | || ||||||||||| |||
Sbjct 14216 TTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAGTGGATGTTCTCG 14275
Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664
|||||||| |||||||| ||||||
Sbjct 14276 ATGGCGATTTGGAAGCCGTAAAAG 14299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7894949893764117
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |