Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq197427 178 2e-38 >seq197427 Length=19924 Score = 178 bits (196), Expect = 2e-38 Identities = 192/254 (76%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 796147 CTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATG 796206 |||||||| | ||| ||||||||||||||||| | ||||||||||||||| ||||| Sbjct 14303 CTGGCCTCAGCTACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATA 14362 Query 796207 CCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTG 796266 ||||| ||||||||| |||||||||||||| |||| ||||| |||||||||||| | Sbjct 14363 CCGTCAGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTC 14422 Query 796267 AGCG---AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 || | |||||||| ||||| | ||| ||||| || || || ||||| ||| Sbjct 14423 AGGGTTTCCTCCCAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAG 14482 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACA 796383 ||||| || || || |||||||| ||||| || || |||| ||| || |||| Sbjct 14483 GAGGCTTCTGCTTTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAG 14542 Query 796384 AAGCGATTGGGGTT 796397 ||||||| ||||| Sbjct 14543 AAGCGATCTGGGTT 14556 Score = 170 bits (188), Expect = 3e-36 Identities = 233/324 (72%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | |||||| |||||| ||| | || ||||| | |||||||| Sbjct 13982 CCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGGCATCAACCCGCGCTTT 14041 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| || ||||| || || ||||| || || || |||||| |||||| Sbjct 14042 TTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAAG 14101 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | |||| |||||||| |||| || ||| | || ||||||||| | |||||| Sbjct 14102 GCAACGATTCGCTCGGCGAAAGACTC---GCCACC---GTCGATCCACTTGAGGGCCCAC 14155 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| || ||| | || | ||| ||||| ||| | || || ||||||||||| Sbjct 14156 TTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCCGGTCCTTCTCG 14215 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | ||||||| ||| | |||| | ||| ||| | || ||||||||||| ||| Sbjct 14216 TTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAGTGGATGTTCTCG 14275 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 |||||||| |||||||| |||||| Sbjct 14276 ATGGCGATTTGGAAGCCGTAAAAG 14299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7894949893764117