Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq176217 95.1 1e-14 seq194543 89.7 4e-13 seq194317 89.7 4e-13 seq181690 89.7 4e-13 >seq176217 Length=4970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || |||||| | || || || ||||| || | || ||| | | Sbjct 2518 ATGCAAATATTCGTGAAAACTCTCACCGGGAAGACCATCACTTTGGAGGTGGAAAGTTCC 2459 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| ||||| ||||| | ||| ||| ||| Sbjct 2458 GATACAATTGATAACGTTAAGGCAAAGATCCAAGATAAGGAAGGGATTCCCCCGGACCAG 2399 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || ||||| |||||||| | | || | ||||| |||||| Sbjct 2398 CAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGGAGGACCCTAGCGGATTACAAC 2339 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || ||||| ||||| Sbjct 2338 ATCCAAAAGGAGTCGACCCTGCACTTGGTG 2309 >seq194543 Length=10949 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || |||||||| | || |||||||| |||||| | ||| ||| ||| Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || || || || ||||||||||| | || ||||| Sbjct 3542 -GATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCA 3600 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | |||| ||| ||||| ||| |||| || | || | || || || || Sbjct 3601 GCAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATAA 3660 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || || |||||||| |||||||| ||||| |||| || |||||| Sbjct 3661 TATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTT--GAGGGG 3705 >seq194317 Length=10706 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || |||||||| ||||| || |||||||| ||| | || || | Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || ||| |||||| || ||||||||| | || || Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || ||| | ||||| | || || || ||||||||||||| | ||| | || |||||| Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356 Query 107733 AACATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| || ||||| || ||| | ||| Sbjct 1355 AACATCCAGAAGGAATCCACGCTCCAC 1329 >seq181690 Length=5866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | ||||| || ||||| ||| | ||| |||| | Sbjct 3189 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAAGTGGAGAGTTCG 3130 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||||| ||||| || || | || || ||| Sbjct 3129 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAG 3070 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||| | ||| || |||||||| || |||| || | ||||| ||||| Sbjct 3069 CAAAGGCTTATCTTTGCTGGAAAACAGCTTGAAGACGGACGCACCCTTGCGGATTACAAT 3010 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| || || | ||| |||| Sbjct 3009 ATTCAAAAGGAATCGACCCTTCACTTGGT 2981 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | ||||| || ||||| ||| | || |||| | Sbjct 3417 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAGGTGGAGAGTTCG 3358 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||||| ||||| || || | ||| || ||| Sbjct 3357 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCCCCAGACCAG 3298 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||| | ||| || |||||| ||||||| | | || | || || ||||| Sbjct 3297 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACAAT 3238 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 3237 ATCCAAAAGGAGTCGAC 3221 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || || |||||||| || || || | || |||| | Sbjct 2961 ATGCAAATCTTTGTTAAGACCTTGACAGGCAAGACTATCACTTTGGAGGTGGAGAGTTCA 2902 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | ||||| ||| ||| || || || || | || ||||||| Sbjct 2901 GACACAATTGACAACGTAAAGGCAAAAATTCAGGACAAGGAGGGTATTCCGCCGGATCAG 2842 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||| ||||||| | | || | || ||||||||| Sbjct 2841 CAGAGGTTGATCTTTGCAGGGAAACAATTGGAGGATGGAAGGACTTTAGCTGACTACAAC 2782 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 2781 ATTCAGAAGGAGTCGACCCTTCACTTGGTG 2752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397903550953867