Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq176217 95.1 1e-14
seq194543 89.7 4e-13
seq194317 89.7 4e-13
seq181690 89.7 4e-13
>seq176217
Length=4970
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || || |||||| | || || || ||||| || | || ||| | |
Sbjct 2518 ATGCAAATATTCGTGAAAACTCTCACCGGGAAGACCATCACTTTGGAGGTGGAAAGTTCC 2459
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | || || |||||| ||||| ||||| | ||| ||| |||
Sbjct 2458 GATACAATTGATAACGTTAAGGCAAAGATCCAAGATAAGGAAGGGATTCCCCCGGACCAG 2399
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || ||||| |||||||| | | || | ||||| ||||||
Sbjct 2398 CAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGGAGGACCCTAGCGGATTACAAC 2339
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| ||||||||||| || ||||| |||||
Sbjct 2338 ATCCAAAAGGAGTCGACCCTGCACTTGGTG 2309
>seq194543
Length=10949
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| || |||||||| | || |||||||| |||||| | ||| ||| |||
Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|||||| ||| | || || || || ||||||||||| | || |||||
Sbjct 3542 -GATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCA 3600
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | | |||| ||| ||||| ||| |||| || | || | || || || ||
Sbjct 3601 GCAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATAA 3660
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781
|| || |||||||| |||||||| ||||| |||| || ||||||
Sbjct 3661 TATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTT--GAGGGG 3705
>seq194317
Length=10706
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| || || |||||||| ||||| || |||||||| ||| | || || |
Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|| || ||| | | || ||| |||||| || ||||||||| | || ||
Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|| ||| | ||||| | || || || ||||||||||||| | ||| | || ||||||
Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356
Query 107733 AACATTCAAAAGGAGTCTACGTTGCAC 107759
||||| || ||||| || ||| | |||
Sbjct 1355 AACATCCAGAAGGAATCCACGCTCCAC 1329
>seq181690
Length=5866
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| ||||| | ||||| || ||||| ||| | ||| |||| |
Sbjct 3189 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAAGTGGAGAGTTCG 3130
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || ||||||| ||||| || || | || || |||
Sbjct 3129 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAG 3070
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| || ||||| | ||| || |||||||| || |||| || | ||||| |||||
Sbjct 3069 CAAAGGCTTATCTTTGCTGGAAAACAGCTTGAAGACGGACGCACCCTTGCGGATTACAAT 3010
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||||||||||| || || | ||| ||||
Sbjct 3009 ATTCAAAAGGAATCGACCCTTCACTTGGT 2981
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| ||||| | ||||| || ||||| ||| | || |||| |
Sbjct 3417 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAGGTGGAGAGTTCG 3358
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || ||||||| ||||| || || | ||| || |||
Sbjct 3357 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCCCCAGACCAG 3298
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| || ||||| | ||| || |||||| ||||||| | | || | || || |||||
Sbjct 3297 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACAAT 3238
Query 107736 ATTCAAAAGGAGTCTAC 107752
|| ||||||||||| ||
Sbjct 3237 ATCCAAAAGGAGTCGAC 3221
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| || || || |||||||| || || || | || |||| |
Sbjct 2961 ATGCAAATCTTTGTTAAGACCTTGACAGGCAAGACTATCACTTTGGAGGTGGAGAGTTCA 2902
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | ||||| ||| ||| || || || || | || |||||||
Sbjct 2901 GACACAATTGACAACGTAAAGGCAAAAATTCAGGACAAGGAGGGTATTCCGCCGGATCAG 2842
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| | || | ||| || ||||| ||||||| | | || | || |||||||||
Sbjct 2841 CAGAGGTTGATCTTTGCAGGGAAACAATTGGAGGATGGAAGGACTTTAGCTGACTACAAC 2782
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||| |||||||| || | ||| |||||
Sbjct 2781 ATTCAGAAGGAGTCGACCCTTCACTTGGTG 2752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397903550953867
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |