Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq194543 96.9 5e-15 seq176217 91.5 2e-13 >seq194543 Length=10949 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||||||||| | || || || | Sbjct 3483 TGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCTG 3542 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | ||||| || ||||| ||| ||||||||| ||||| || ||||| | Sbjct 3543 ATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCAGC 3602 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| || || || ||| | || || |||||||||||| Sbjct 3603 AGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATAATA 3662 Query 146212 TACAAAAAGAATCGAC 146227 | || || || ||||| Sbjct 3663 TCCAGAAGGAGTCGAC 3678 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || || || || ||||||||| | || || || | | Sbjct 3711 TGCAGATATTTGTCAAGACTTTGACTGGGAAGACAATTACTCTGGAGGTGGAGAGTTCTG 3770 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||| ||||| ||| || || ||||| || ||||||| Sbjct 3771 ATACAATTGACAATGTGAAGGCTAAGATACAGGATAAGGAGGGGATTCCGCCTGATCAAC 3830 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| || || || || || ||| | || || | |||||||||| Sbjct 3831 AGAGATTGATTTTTGCTGGGAAGCAGTTGGAAGATGGGCGGACTCTAGCTGATTATAATA 3890 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || || || || |||| Sbjct 3891 TCCAGAAGGAGTCAACCCTCCA 3912 >seq176217 Length=4970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | ||||||||||| || ||| | || || ||| | Sbjct 2745 TGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCTG 2686 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || ||| ||| || || || ||||| ||||| || || || | Sbjct 2685 ACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGC 2626 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || |||||||| || || ||| | || || | || | | ||||| |||| Sbjct 2625 AAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAATA 2566 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||| ||||| || ||||||| || | || | ||||| || | ||||||| Sbjct 2565 TCCAAAAGGAATCCACCCTCCATTTGGTGCTCCGTCTCAGAGGTGGCATGCAAATATT 2508 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | ||||| | || || || || || ||| | || || ||| | || Sbjct 2517 TGCAAATATTCGTGAAAACTCTCACCGGGAAGACCATCACTTTGGAGGTGGAAAGTTCCG 2458 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || ||| ||| ||||| ||||| || || || | Sbjct 2457 ATACAATTGATAACGTTAAGGCAAAGATCCAAGATAAGGAAGGGATTCCCCCGGACCAGC 2398 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| || |||||| | || ||| || || || | ||||| || | Sbjct 2397 AGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGGAGGACCCTAGCGGATTACAACA 2338 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || ||||| Sbjct 2337 TCCAAAAGGAGTCGAC 2322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784198989102760