Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq198569 262 5e-65 seq198106 210 3e-49 seq198282 179 4e-40 seq199332 156 5e-33 seq200167 132 6e-26 seq197127 131 2e-25 seq198621 122 1e-22 seq198258 116 4e-21 seq198491 114 2e-20 seq198455 102 1e-16 seq180125 95.1 1e-14 seq192638 84.2 3e-11 >seq198569 Length=8129 Score = 262 bits (290), Expect = 5e-65 Identities = 333/454 (73%), Gaps = 18/454 (4%) Strand=Plus/Plus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 |||||||| ||||||||||||||| | |||| | |||||||| || ||||| |||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCA 178003 ||||| || || ||||||||||| || | || || ||||| | ||||||| | ||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTATCCAATTGGTCA 2898 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 ||| || || |||| |||||||| || |||||||||||||| |||| |||| | || Sbjct 2899 AGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGT 2958 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCC-GTTCCACATGCTCGGTGTTGCTGGGG 178122 |||||| || || |||||||||||||||||||| ||| | ||| | ||||| ||||| | Sbjct 2959 ATTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTG 3018 Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182 |||| | || ||||| ||| ||||||||||| ||| ||| | ||| Sbjct 3019 TATTGGACGGCTCTCTATTCAATGCTATGCATG--------GTTCCTTGGTAGCT----- 3065 Query 178183 GTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242 | | | ||||| | || || | || |||| || || ||||| || |||| Sbjct 3066 -TCTAATCAGGGAAAC-CACCCCGCTAATGAAGGGTACAGATTTGGTCAAGAGGAGGAAA 3123 Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | ||||| || || || || |||||||| || || || ||||||||||||||||| | Sbjct 3124 CTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 3183 Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGC 178336 |||||||||| ||||| | || || ||||| || Sbjct 3184 TCAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq198106 Length=2703 Score = 210 bits (232), Expect = 3e-49 Identities = 507/756 (67%), Gaps = 20/756 (3%) Strand=Plus/Plus Query 179206 TGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATT 179265 ||||| ||| | || || | |||| ||| || ||||| || || || || || ||||| Sbjct 626 TGGTGTCAATTAGGTGGTATGTGGACTTTTGTTGCTCTTCATGGCGCTTTTGCACTAATA 685 Query 179266 GGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGC 179324 || |||||| | |||| || ||||| || | ||| || | | | ||||| ||||| Sbjct 686 GGTTTCATGGTATGTCAATTCGAACTTGCTCAATCTGTTCAAT-TATGACCTTATAATGC 744 Query 179325 GATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGG 179384 ||||| || | | || |||| || |||||| |||||| || || || ||||| || Sbjct 745 AATTGCATTCTCAAGACCAATTGTTGTTTTCGTTTTTGTATTCCTGATTTATCCACTCGG 804 Query 179385 ACAATCCAGTTGGTTCTTT-GCGC-CATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTA 179442 | | ||||||| ||| | || || | |||||||| | || || ||| ||||| | Sbjct 805 TTAGTTTGGTTGGTTTTTTTGAGCTCAGC-TTTGGTGTATCAGCTATATTTTGATTCATC 863 Query 179443 CTTTTCTTA-CAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGC 179501 ||||| || |||| || || || |||||| | |||| |||| ||||| |||||| Sbjct 864 CTTTTTTTTTCAAGAGTTTCATAATTGGACATTGAACCTAGTTCATATGATTAGAGTTGT 923 Query 179502 AGGTATCCTGGGTGGTGCTCTGCT---CTCTGC--TATTCATGGAGTAACTGTAGAGAAT 179556 | | | ||| || ||| |||| || ||| ||||||||| ||| || ||| Sbjct 924 TGATGTATTGGCTGCGGCTTTGCTATGCTATGCAATATTCATGGCACTGTTGTGGAAAAT 983 Query 179557 ACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAG 179616 || || | |||||||||||| ||||| ||||| || || || | || |||| Sbjct 984 ACTTTATCTGAAGATGGAGATGGTGCAAATACATTCTGGGCTTTTAACACAACTCAAGCT 1043 Query 179617 GAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCG 179676 | || || ||||| ||||| || | | | | |||||| | || || || |||||| | Sbjct 1044 AAAGAAACTTATTCAATGGTCACTGTCAGCTGCTTTTGGCCCCAAATTTTTGGGGTTGCT 1103 Query 179677 TTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGG 179736 ||| |||||| |||| || || ||||||| | | ||| | || | | | ||| Sbjct 1104 TTTTCCAATAAATGTTGTTTACATTTCTTTATGTTATTTAAACTAGTAACCGATGCATGG 1163 Query 179737 GTCTCTTCTATTGGCATCA-TTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAG 179795 | | || |||| | || | || || || | || || ||||| ||||| || | Sbjct 1164 ATGAGTGCTCTTGG-AGCAGTCGGTCTGGCCGTGAACCTGCGTGCCTATGACTTCATTTC 1222 Query 179796 TCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCT 179855 | ||| || | | | |||| ||||| | || ||||| || | | |||||| Sbjct 1223 TTTAGAAATTCGCGTACTAGAAAATCCTAAATTTGAGAC-------ACCATAAGCATTCT 1275 Query 179856 TCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCAT 179915 | ||||| || | ||||||||| |||| || ||||| || ||||||||| | || Sbjct 1276 CTTAAATGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTAT 1335 Query 179916 CTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| || || || ||||| |||| ||||| || Sbjct 1336 ATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 1371 >seq198282 Length=4172 Score = 179 bits (198), Expect = 4e-40 Identities = 213/289 (74%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 179633 TGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTT 179692 |||| || || ||||| |||||||| || ||||| |||||| | ||| |||||| |||| Sbjct 1 TGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 60 Query 179693 GGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCA 179752 |||| || ||||||| | | ||||| || || | ||| | ||| | | || |||| Sbjct 61 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAG 120 Query 179753 TCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAG 179812 | | || ||||| || || || ||||| ||||| || || ||| || || | |||| Sbjct 121 TAGTCGGTCTAGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAG 180 Query 179813 CAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTAC 179872 | ||||||||||| || ||||| ||||| || || |||||||| | ||||| || | | Sbjct 181 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAACATTCTCTTAAATGAGGGTATTC 240 Query 179873 GTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCC 179921 |||||||| |||| || ||||| || ||||||||| | || ||||| Sbjct 241 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 289 >seq199332 Length=2940 Score = 156 bits (172), Expect = 5e-33 Identities = 319/464 (69%), Gaps = 15/464 (3%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGG---GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTAC 179005 ||||||||||| ||| ||| || || || || ||||| |||||||| || || | | Sbjct 2527 TGGATGACTGG-TTA--CGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGC 2471 Query 179006 TTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGA 179065 | || | ||| ||| | ||| | || |||||| |||| || ||| | ||||| || Sbjct 2470 TCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTT 2411 Query 179066 GTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCA 179124 ||||| || || || | || ||||||||| | || || ||| ||||| | || || Sbjct 2410 CATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGC-AACTTCTTAACCGCG 2352 Query 179125 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 179184 || || || || |||||| || | | | | ||| | | |||| |||||||| || Sbjct 2351 GCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGTCCAGAA 2292 Query 179185 TCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTC 179244 | || || |||| || ||||| ||| | || || || |||| || || |||||| Sbjct 2291 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTTGCTCTC 2232 Query 179245 CACGGTGCCTTCGCCCTAA----TTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TC 179299 ||||| || || | |||| |||| ||||| |||| |||||||| || || || Sbjct 2231 CACGGCGCTTTTGGACTAATAGGTTGGTTTCAT-TAAAGTCAATTTGAACTTGCTCGATC 2173 Query 179300 TCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTA 179359 | || | | || ||||| ||||| || || || ||| ||| ||||| || || ||| Sbjct 2172 TGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTTGTTT 2114 Query 179360 GTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTT 179403 |||||| || || || || || || || || ||||||||||| Sbjct 2113 CTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTT 2070 >seq200167 Length=15642 Score = 132 bits (146), Expect = 6e-26 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 178019 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 178078 || ||||||||| || |||||||||||||| |||| ||| |||||||| || || || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 178079 CAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 178138 ||| |||||||||||||| || |||||| | ||||| ||||| ||||| ||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 178139 TTTCTCTGCTATGCATGG 178156 ||| | |||||||||| Sbjct 10706 GTTCAGTACTATGCATGG 10689 >seq197127 Length=16832 Score = 131 bits (144), Expect = 2e-25 Identities = 116/144 (81%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 177981 TTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTC 178039 ||||| | ||||||| | |||||||| || || |||| |||||||| || ||||| Sbjct 16825 TTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTC 16766 Query 178040 TGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTT 178099 ||||||||| |||| |||| | |||||||| || || |||||||||||||||||||| || Sbjct 16765 TGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATT 16706 Query 178100 CCACATGCTCGGTGTTGCTGGGGT 178123 |||||| | ||||| ||||| || Sbjct 16705 TCACATGTTAGGTGTAGCTGGTGT 16682 >seq198621 Length=9897 Score = 122 bits (134), Expect = 1e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 179493 GGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGA 179552 ||||||||| ||| | | || | ||| |||| | ||||||||||| | || || || Sbjct 1 GGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGA 60 Query 179553 GAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCA 179612 ||||| || | ||||||||| || ||||| ||||| || || || | || || Sbjct 61 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCA 120 Query 179613 AGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGT 179672 || || || || ||||| ||||| || || ||||| |||||||| || ||||| ||||| Sbjct 121 AGCCGAAGAAACTTATTCAATGGTCACCGCCAACCGCTTTTGGTCCCAAATCTTTGGGGT 180 Query 179673 TCCGTTTAGCAATAAGCGTTGGTTCCA 179699 | | ||| |||||| |||||||| || Sbjct 181 TGCTTTTTCCAATAAACGTTGGTTACA 207 >seq198258 Length=3934 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 178023 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAT 178082 |||||| | || || ||| ||||||| |||| | || | |||||| | || || |||||| Sbjct 3146 ATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTAGGCTGAGCACAAT 3205 Query 178083 ATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 178142 |||||| | ||||| || |||||| | ||||| ||||| |||||||| || ||||| || Sbjct 3206 ATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCTCTATTT 3265 Query 178143 TCTGCTATGCATGG 178156 |||||||||||| Sbjct 3266 AGTGCTATGCATGG 3279 >seq198491 Length=6715 Score = 114 bits (126), Expect = 2e-20 Identities = 138/185 (75%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 179392 AGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTA 179451 |||||||| ||| |||| ||||| || | || || ||| ||||| | ||||| || Sbjct 5667 AGTTGGTTTTTT-CGCCTAGCTTTGGCGTATCCGCTATATTTCGATTCATCCTTTTTTTT 5609 Query 179452 CAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTG 179511 ||||||||| | || ||||| | ||||| ||||| |||||||||||||| ||| | | Sbjct 5608 CAAGGTTTC-ATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTA 5550 Query 179512 GGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGAT 179571 || | ||| |||| | ||||||||||| | || || || ||||| || | ||||||| Sbjct 5549 GGCGCGGCTTTGCTATGCGCTATTCATGGCGCCACCGTGGAAAATACTTTATTTGAAGAT 5490 Query 179572 GGAGA 179576 || || Sbjct 5489 GGTGA 5485 >seq198455 Length=6199 Score = 102 bits (112), Expect = 1e-16 Identities = 131/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 179364 ATTTCTCATCTACCCAC-TTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTG 179422 ||| || || || |||| |||| |||| ||||||| ||||||||| ||||| || Sbjct 6023 ATTCCTGATTTATCCACCTTGGTGAATCTGGTTGGTTTTTTGCGCCAAGCTTTGGCGTAT 6082 Query 179423 CGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCT 179482 | || ||| ||||| | ||||| || ||||| || || || ||||| | ||||| | Sbjct 6083 AA-CTATATTTCGATTCATCCTTTTTTTTCAAGGGTTTCATAATTGGACGTTGAACCCAT 6141 Query 179483 TTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGG 179540 |||| |||||||||||||| ||| | | || | ||| |||| | ||||||||||| Sbjct 6142 TTCATATGATGGGAGTTGCCGGTGTATTAGGCGCGGCTTTGCTATGCGCTATTCATGG 6199 >seq180125 Length=5570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 178191 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAAC 178250 ||||||| ||| ||| || | ||||||| ||||| ||||| ||| |||| | |||| Sbjct 895 ACAGAAAATGAATCCGCTAATGAAGGTTACAGATTCGGTCAAGAGGAATAAACTTCTAAC 954 Query 178251 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGC 178297 ||| | ||||| |||||||| || || || ||||||||||||||||| Sbjct 955 ATCATAGCAGCTCATGGTTATTTTGGCCGCTTGATCTTCCAATATGC 1001 >seq192638 Length=9393 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 || || ||| | ||||| ||| |||| || || || || |||| || ||| | Sbjct 2856 TTCGAGTGTCCCGATGACGTGTATGTCCTCGACCACGCCGAGGAGTCAGGGATCGATTTG 2915 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| || ||||| ||| | || || | ||||| || ||| | |||||||| | Sbjct 2916 CCGTACTCGTGCCGTGCCGGTTCGTGCTCCTCTTGTGCAGGGAAAGTGGTTGAAGGGAGC 2975 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || || |||||||| | |||||| ||||||||||| || | ||||| | || | Sbjct 2976 GTGGACCAGTCTGATGGGAGTTTCCTGGATGATGACCAGATAGACGCAGGTTGGGTCCTC 3035 Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||||| || || || || | || ||| | | ||||| || | || || || || || Sbjct 3036 ACTTGTGTTGCTTATCCAAAGTCTGATCTTGTTATTGAGACACACAAGGAAGAGGAGCT 3094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604151495119480