Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq194543 91.5 1e-13 seq181690 87.8 2e-12 seq176217 82.4 7e-11 >seq194543 Length=10949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || |||| ||| | || | |||| || || ||||| ||||||||||||||| Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | ||| ||||| ||||| |||||| |||| ||||| |||||||| ||||| Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || || ||| ||| | | || | || || | | ||| || Sbjct 3133 GATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGAC 3074 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 3073 CTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026 >seq181690 Length=5866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || | |||||||| ||| || |||| || ||||| ||||| || |||||||| Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| || ||||| |||||| |||| || | |||||| || || || Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || || || ||| ||| || | | || | || || | || ||| Sbjct 3083 ATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACT 3142 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | ||||| || || | ||||| || |||||||||||| Sbjct 3143 TCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3190 >seq176217 Length=4970 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAAT-CGC 137242 |||||| | | ||| | || || || | || || || ||||| |||||||||| ||| Sbjct 2291 GCCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGC 2350 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | || ||| || || |||||||| |||||| ||||||| | ||||| || || | Sbjct 2351 T-AGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGG 2409 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| || || || ||| || | | || | || || | ||| | Sbjct 2410 GAATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCA 2469 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | ||| | ||||| ||||| | ||||| |||||||||||||| Sbjct 2470 CCTCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487321400319600