Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq196719 104 6e-17 seq195219 104 6e-17 seq197427 87.8 4e-12 seq194000 84.2 5e-11 >seq196719 Length=14904 Score = 104 bits (114), Expect = 6e-17 Identities = 178/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 279845 GATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATT 279904 ||| |||| || || |||||| | | |||||||||||||| |||| | ||||| Sbjct 10775 GATCTTCAGCGATCAATTCCTTCGATGGTTGATGGTTTGAAACCAGGACAGAGGAAGATC 10716 Query 279905 ATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGT 279964 | ||| ||| |||||| | || || || |||||| ||||||||||| | ||| Sbjct 10715 CTGTTCTGTTCTTTCAAGCGCAACTTTGTCAAGGAAGCAAAAGTTGCTCAGTTCTCTGGT 10656 Query 279965 TATGTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTG 280022 ||||| || || ||| | | ||| ||||| || || || |||| | | | || | |||| Sbjct 10655 TATGTATCTGAGCATTCGGCTTACCATCATGGCGAGCAGAGTCT-TGCTA-GTACAATTG 10598 Query 280023 TAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTC 280082 | ||| | || || |||| | ||| |||||| |||| || || ||| ||||| | Sbjct 10597 TTGGTATGGCACAGGATTATGTGGGGAGTAACAACATAAACCTTCTCCAACCCAATGGCC 10538 Query 280083 AATTTGGTTCTCGTA 280097 | ||||| |||||| Sbjct 10537 AGTTTGGCACTCGTA 10523 >seq195219 Length=11697 Score = 104 bits (114), Expect = 6e-17 Identities = 135/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||| || ||||| |||| || || ||||| ||||||||| ||||| ||||||| Sbjct 7561 GACACTTAAATGATGGAGATTTTGTCCTCTTCAACAGGCAACCAAGCCTGCACAAAATGT 7502 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAATGTAAG 305424 |||| |||| |||||| |||| || || | | | | | | || || || ||| || Sbjct 7501 CTATCATGGGGCATAAAATCAAG--ATCATGCCGTACTCAACCTTCCGCTTGAATTTATC 7444 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | ||||| ||||| ||||||||||||||||| ||||| |||||||| ||||| Sbjct 7443 TGTCACTTCTCCTTACAATGCAGATTTTGATGGAGATGAGATGAACATGCATGTCCCTCA 7384 Query 305485 ATC 305487 || Sbjct 7383 GTC 7381 >seq197427 Length=19924 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || |||||||| || ||||| || ||||| || || ||||| || ||||| ||| Sbjct 14106 GTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGG 14047 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || || ||||| || ||||||||||| | | || ||||| | || ||||| ||||| Sbjct 14046 CTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGATCTCAAGAGAC 13987 Query 131984 GAAGCATTGCA 131994 |||| ||||| Sbjct 13986 GAAGGCTTGCA 13976 >seq194000 Length=10408 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| || |||||||| | || || || |||||||||||||| |||| ||||| Sbjct 10108 GATTATGTACTGTTCAACCGACAGCCTAGTCTTCATAAAATGTCTATCATGGGGCATAAG 10049 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 |||| ||||| | | || || || | ||| || || | ||| || || | Sbjct 10048 ATCAAG--ATTATGCCACACTCAACTTTCCGTCTGAATTTATCTGTTACTACACCATACA 9991 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||| || |||||||||||||||||||| ||||||||||| || ||| Sbjct 9990 ATGCTGACTTTGATGGAGATGAAATGAACATGCATGTACCCCAGTCA 9944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183768505374083