Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq196719 104 6e-17
seq195219 104 6e-17
seq197427 87.8 4e-12
seq194000 84.2 5e-11
>seq196719
Length=14904
Score = 104 bits (114), Expect = 6e-17
Identities = 178/255 (70%), Gaps = 4/255 (2%)
Strand=Plus/Minus
Query 279845 GATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATT 279904
||| |||| || || |||||| | | |||||||||||||| |||| | |||||
Sbjct 10775 GATCTTCAGCGATCAATTCCTTCGATGGTTGATGGTTTGAAACCAGGACAGAGGAAGATC 10716
Query 279905 ATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGT 279964
| ||| ||| |||||| | || || || |||||| ||||||||||| | |||
Sbjct 10715 CTGTTCTGTTCTTTCAAGCGCAACTTTGTCAAGGAAGCAAAAGTTGCTCAGTTCTCTGGT 10656
Query 279965 TATGTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTG 280022
||||| || || ||| | | ||| ||||| || || || |||| | | | || | ||||
Sbjct 10655 TATGTATCTGAGCATTCGGCTTACCATCATGGCGAGCAGAGTCT-TGCTA-GTACAATTG 10598
Query 280023 TAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTC 280082
| ||| | || || |||| | ||| |||||| |||| || || ||| ||||| |
Sbjct 10597 TTGGTATGGCACAGGATTATGTGGGGAGTAACAACATAAACCTTCTCCAACCCAATGGCC 10538
Query 280083 AATTTGGTTCTCGTA 280097
| ||||| ||||||
Sbjct 10537 AGTTTGGCACTCGTA 10523
>seq195219
Length=11697
Score = 104 bits (114), Expect = 6e-17
Identities = 135/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366
|||| || ||||| |||| || || ||||| ||||||||| ||||| |||||||
Sbjct 7561 GACACTTAAATGATGGAGATTTTGTCCTCTTCAACAGGCAACCAAGCCTGCACAAAATGT 7502
Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAATGTAAG 305424
|||| |||| |||||| |||| || || | | | | | | || || || ||| ||
Sbjct 7501 CTATCATGGGGCATAAAATCAAG--ATCATGCCGTACTCAACCTTCCGCTTGAATTTATC 7444
Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484
|| | | ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 7443 TGTCACTTCTCCTTACAATGCAGATTTTGATGGAGATGAGATGAACATGCATGTCCCTCA 7384
Query 305485 ATC 305487
||
Sbjct 7383 GTC 7381
>seq197427
Length=19924
Score = 87.8 bits (96), Expect = 4e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923
|| || |||||||| || ||||| || ||||| || || ||||| || ||||| |||
Sbjct 14106 GTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGG 14047
Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983
|| || ||||| || ||||||||||| | | || ||||| | || ||||| |||||
Sbjct 14046 CTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAACGAGTTGATCTCAAGAGAC 13987
Query 131984 GAAGCATTGCA 131994
|||| |||||
Sbjct 13986 GAAGGCTTGCA 13976
>seq194000
Length=10408
Score = 84.2 bits (92), Expect = 5e-11
Identities = 120/167 (72%), Gaps = 4/167 (2%)
Strand=Plus/Minus
Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383
|||| || |||||||| | || || || |||||||||||||| |||| |||||
Sbjct 10108 GATTATGTACTGTTCAACCGACAGCCTAGTCTTCATAAAATGTCTATCATGGGGCATAAG 10049
Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441
|||| ||||| | | || || || | ||| || || | ||| || || |
Sbjct 10048 ATCAAG--ATTATGCCACACTCAACTTTCCGTCTGAATTTATCTGTTACTACACCATACA 9991
Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488
|||| || |||||||||||||||||||| ||||||||||| || |||
Sbjct 9990 ATGCTGACTTTGATGGAGATGAAATGAACATGCATGTACCCCAGTCA 9944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1183768505374083
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |